1 5' 3' | 2 5' 3' | 3 5' 3' |
gtctgtggtctgttagctttatatatacaggagccatgaagtatatatatatatataaggatagatcttgcagtttgaagcatctaattttgtttcccatatctgctcttgagtctcgactcatggtgtgctgcttcttggatcttacttagctagGTATTATTGCAAGGAAGAATTAATATGCATCCAGGAGGTGGACCACTGTCGGTGCCACCAGGCTTCCGCTTCCACCCGACCGACGAGGAGCTCCTCTACT
species | Zea mays |
transcript | GRMZM2G041746_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGAGGAGCTGATCGAGCTACAAGCAATCGGGCAAAGGATATTTCCGAG GTATTATTGCAAGGAAGAATTAATATGCATCCAGGAGGTGGACCACTGTCGEST: gi|93015148|gb|EB640668.1|EB640668
genomic: TTTGAGGAGCTGATCGAGCTACAAGCAATCGGGCAAAGGATATTTCCGAGgtctgtggtc ... acttagctagGTATTATTGCAAGGAAGAATTAATATGCATCCAGGAGGTGGACCACTGTCG
EST: CGAGCTACAAGCAATCGGGCAAAGGATATTTCCGAG GTATTATTGCAAGGAAGAATTAATATGCATCCAGGAGGTGGACCACTGTCG
genomic: CGAGCTACAAGCAATCGGGCAAAGGATATTTCCGAGgtctgtggtc ... acttagctagGTATTATTGCAAGGAAGAATTAATATGCATCCAGGAGGTGGACCACTGTCG
tctgctcttgagtctcgactcatggtgtgctgcttcttggatcttacttagctagGTATTATTGCAAGGAAGAATTAATATGCATCCAGGAGGTGGACCACTGTCGGTGCCACCAGGCTTCCGCTTCCACCCGACCGACGAGGAGCTCCTCTACT
atcttac putative branch site (score: 5)
tcttactt CT-rich tract
ttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtggtctgttagctttatatatacaggagccatgaagtatatatatatatataaggatagatcttgcagtttgaagcatctaattttgtttcccatatctgctcttgagtctcgactcatggtgtgctgcttcttggatcttacttagctagGTATTATTGCAAGGAAGAATTAATATGCATCCAGGAGGTGGACCACTGTCGGTGCCACCAGGCTTCCGCTTCCACCCGACCGACGAGGAGCTCCTCTACT
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