Sequence
atgc intronic sequence ATGC exonic sequencegttaggcccattctttgatatttgcacatgtagatacatgggtggtgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcagGTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATGGTGATGGAGAACCTTTTTTTCAAGAGAAATATCTCAAGAGTCTATGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G01680.1 (Glycine max), 3'ss of exon 16
-------------gttaggcccattctttgatatttgcacatgtagatacatgggtggtgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcagGTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATGGTGATGGAGAACCTTTTTTTCAAGAGAAATATCTCAAGAGTCTATGATC
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gtgagaactgagaactcaagtctttatttgacattt-tgtatacaggcgccagactggtgtataaatgtaaattttatgtt--tacaat----gtttcttgttttggtggcagGTCACTGTCAAATACCCAAAAGGTGGCAAGGAAACAAAAATAGATCTGATGGTAATGGAGAATCTCTTTTACAAGAGAAACATATCCAGGGTATATGATC
upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA07G34030.1 (Glycine max), 3'ss of exon 11
------gttaggcccattctttgatatttgcacatgtagatacatgggtggtgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcagGTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATGGTGATGGAGAACCTTTTTTTCAAGAGAAATATCTCAAGAGTCTATGATC
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gtgagaactcgactcattatttgacattt-tacacaaacatgccagaccggtgtataaatgtaaattttatgtttacaaagtttc------ttgttttggtggcagGTCACGGTCAAATACCCAAAAGGTGGGAAGGAAACAAAAATAGATCTGATGGTAATGGAAAATCTCTTTTACAAGAGAAAGATATCCAGGATATATGATC
upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G71010.1 (Arabidopsis thaliana), 3'ss of exon 9
gttaggcccattctttga---tatttgcacatgtagatacatgggtggtgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcagGTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATGGTGATGGAGAACCTTTTTTTCAAGAGAAATATCTCAAGAGTCTATGATC
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gttagtgacaatataggagggaatgtgaacttgtaggactctgaa----atgaaataagtgagcatgtgaatgattgatttggaatgatattt---gttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATGGTGATGGAGAATCTCTTCTACAACAGAAGAATATCTAGGATCTATGATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373978|gb|EC938422.1|EC938422EST: TTAGCTCAGGAAGCCCAACTTGCCTTGCTAAAATTCTTGGTATTTATCAG GTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATG
genomic: TTAGCTCAGGAAGCCCAACTTGCCTTGCTAAAATTCTTGGTATTTATCAGgttaggccca ... ccaatggcagGTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcagGTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATGGTGATGGAGAACCTTTTTTTCAAGAGAAATATCTCAAGAGTCTATGATC
tgattttgatttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaggcccattctttgatatttgcacatgtagatacatgggtggtgtgcaaatactaatgttgttctcttgtgattttgatttattggtccaatggcagGTCACTGTCAAAAATCTGAAAGGTGGAAAGGAAACAAAAATGGATTTGATGGTGATGGAGAACCTTTTTTTCAAGAGAAATATCTCAAGAGTCTATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA