Sequence
atgc intronic sequence ATGC exonic sequence...ttacatttttgtctttgcctctgatattaaacattatagagcaaatgcttttctattgttagtatttattgccagtgcaattaacacatttttgtttcagCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g57940.4 (Oryza sativa), 3'ss of exon 7
---------------------ttacatttttgtct------ttgcctctgatattaaacattatagagcaaatgcttttctattgttagtattt-attgccagtgca----------attaacacatttttgtttc------------------agCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAG
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gtaggcttttgttcaaagtagtctcatctgtgtatgaagtattcaatttagttctcaatgtgctatggcatttgctcttatgcattttgtacttgaatcccaaggaattgttgccctgttgatttatttttatttcgtgatgttgaaatcatgcagCATCCAGGTGGAAAGAAGCATCATCTGGTCAGCATGTTGACTATGATCAGAGGCCAGATGTCTTTAG
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g56580.2 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------------------------------ttacatttttgtctttgcctctgatattaaacattatagagcaaatgcttttctattgttagtattta--ttgccagtgcaattaacacattttt--gtttcagCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAG
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gtatgcaatggaaaccttatgtgattgatactggttgcaaaaattgagcacataacccatctcaataagatttaacattccctaatcagaattgcggatgttcttttgtaatgctgtttgtacctaatatcattgtaaaatgtgagttcacaagtgctcatgctaccatttacaatttcagCATCTAAATGGAAGGAAACGCCAAATGGACAGCATGTTGATTATGATCAAAGGCCAGACATATTTAG
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G04580.1 (Glycine max), 3'ss of exon 8
-----------ttacatttttgtctttgcctctgata--ttaaacattata---gagcaaatgcttttc--tattgttagtatttattgccagtgcaattaacacatttttgtttcagCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAG
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gtatgttgtccattcaaaccagttgttgtttatgttgcgtttaactttctgcctcaccacttggtacatgatattttcatgacttattaat-gtccatatggcatgcattgtcttcagCTTCTAGATGGAAGGATGCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861339|gb|DT010394.1|DT010394EST: ACCTGGAACTGCTGATGAGAAGAAGCTATTTCTTATTGATCTTGGTTTGG CCTCTAAATGGAAAGACATCACATCTGGTCAACATGTTGATTATGATCAGA
genomic: ACCTGGAACTGCTGATGAGAAGAAGCTATTTCTTATTGATCTTGGTTTGGgtatgccatc ... tttgtttcagCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttttctattgttagtatttattgccagtgcaattaacacatttttgtttcagCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAG
aattaac putative branch site (score: 2)
tttttgtttc putative PPT
tattgttagtatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttacatttttgtctttgcctctgatattaaacattatagagcaaatgcttttctattgttagtatttattgccagtgcaattaacacatttttgtttcagCCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAG
- - - - - - - -tgcctct
- - - - - - - - - - - - - - - - - - - - gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaca