Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgccattaaatttgtaattcgatgtcaattttctaattgttgggtgtgattatgatgattgttggaagctttcatttttcttacagGTTTGGGAGTATGGTTGCATTCTTTCGCTATTCCCCCATTGATATTCTGTCTGTCCATTTGCCCCCAGCAATGCTTGAATTCAATGGCCAGGTTCAACAA

Basic information

species Vitis vinifera
transcript Vv01s0011g04790.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G01680.1 (Glycine max), 3'ss of exon 10
gtatat------gccattaaatttgtaattcgatgtcaattttctaatt---gttgggtgtgattatgatgattgttggaagctttcatttttcttacagGTTTGGGAGTATGGTTGCATTCTTTCGCTATTCCCCCATTGATATTCTGTCTGTCCATTTGCCCCCAGCAATGCTTGAATTCAATGGCCAGGTTCAACAA---
||| ||      | ||   |||    |||    | |   || | |||||   ||||| | | | ||     |  ||   || |   | | | | | ||||||||||||| |||||||| ||||| || |||||||| ||||||||||| ||||||||| | || ||| |  || | |||||   ||||||  | ||| |    
gtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggttatcaatacttgaaaggtaacaaacaaccttatgtgtaacagGTTTGGGAGCATGGTTGCTTTCTTCCGGTATTCCCCTATTGATATTCTTTCTGTCCATCTACCTCCATCTGTGTTGGAATT---TGGCCACATCCAAGAGGAG

upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G34030.2 (Glycine max), 3'ss of exon 7
gtatat------gccattaaatttgtaattcgatgtcaattttctaatt---gttgggtgtgattatgatgattgttggaagctttcatttttcttacagGTTTGGGAGTATGGTTGCATTCTTTCGCTATTCCCCCATTGATATTCTGTCTGTCCATTTGCCCCCAGCAATGCTTGAATTCAATGGCCAGGTTCAACAA---
||| ||      | ||   |||    |||    | |   || | |||||   |||||   | | ||     |  ||   || |   |   | | | |||||| |||||| |||||||| || || || |||||||| ||||||||||| ||||||||||| || ||| |  || | |||||   ||| ||  | ||| |    
gtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacagGTATGGGAGCATGGTTGCTTTTTTCCGGTATTCCCCTATTGATATTCTTTCTGTCCATTTACCTCCATCTGTGTTGGAATT---TGGTCACATCCAAGAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaattgttgggtgtgattatgatgattgttggaagctttcatttttcttacagGTTTGGGAGTATGGTTGCATTCTTTCGCTATTCCCCCATTGATATTCTGTCTGTCCATTTGCCCCCAGCAATGCTTGAATTCAATGGCCAGGTTCAACAA
 ttctaat  putative branch site (score: 2)
                                     ctttcatttttcttac  putative PPT
                                      tttcatttttctta  TA-rich tract