Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacatctagtgagcagcagctttaatttcagttacaatattttgtcagttgcctgtgagggcatattctaatgggcatagttcttaaatgttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA

Basic information

species Vitis vinifera
transcript Vv08s0032g00310.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g08960.1 (Oryza sativa), 3'ss of exon 5
gacatctagtgagcagcagctttaatttcagttacaatattttgtcagttgcctgtgagggcatattctaatgggcatagttcttaa---atgttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA
 |||     |        |  | ||   || | |||   |   | || || | | |||    |   |  | |     || ||| |      | || | ||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || ||| | ||||||||||| ||||||||||||||| ||| ||| ||||| |
-acaatgcatatttcatggactcaaga-cattgacatattacaggcaatttcat-tgatttaactgttcagtacttctatttcctgctttgtattatttccagTCGCTGCTTTGCGATCCAAACCCAAATTCACCTGCCAACTCTGAAGCTGCCCGCCTATTCAGTGAGAACAAGCGGGAATACAACCGAAAAGTTCGTGAGA

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 3'ss of exon 5
gacatctagtgagcagcagctttaatttcagttacaatattttgtcagtt-gcctgtgagggcatattctaatgggcatagttcttaaatgttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA----------------------------------------------
                                       |||  |   ||   ||||   |   || |   ||     |   |  |   | || | ||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || ||| | ||||||||||| ||||||||||||||| ||| ||| ||||| |                                              
---------------------------------------tttcattgatttaactgttcag---tacttctat-----ttcctgctttgtattatttccagtcgctgctttgcgatccaaacccaaattcacctgccaactctgaagCTGCCCGCCTATTCAGTGAGAACAAGCGGGAATACAACCGAAAAGTTCGTGAGATAGTGGAGCAGAGCTGGACCGCGGACTGATCCACTCCATCTAACCA

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G110983_T03 (Zea mays), 3'ss of exon 3
-gacatc--tagtgagcagcagctttaatttcagttacaatattt-tgtcagttgcctgtgagggcatattctaatgggcatagttcttaaatgttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA
 | ||||  |  | |  |     | | || |   ||| |  || | ||    | ||    | | |  | |   | |   |  || | |    ||   | | |||||  || | || ||||||||||| || || || || |||||||||||||| ||||||||||| ||||| ||||| || |||||| | | ||| || ||  
tgccatcgctgtttatgaattattatgatgttc-ttaaaccatctgtgctgatggctacagtgcgtgtgtgtgactaacctgaggttt---gtgccatttgcagTCATTGTTGTGCGATCCAAACCCGAATTCGCCCGCTAACTCTGAAGCCGCCCGCATGTTCAGCGAGAACAAGCGAGAGTACAACCGCAAAGTTCGGGAGG

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G02760.1 (Arabidopsis thaliana), 3'ss of exon 5
------------------------------------------gacatctagtga--gcagcagctttaatttcagttacaatattttgt-cagttgcctg--------tgagggcatattctaatgggcatagttcttaaatgttttatc-cagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA
                                           ||   |  |||  |  |    | |  || |       || ||||   | | |   ||        |||   |||       |   ||     | |   | ||||||| |||||  |||| |||||||| || || || || |||||||| || ||||| ||||| ||||||||||| |  ||||| || |||||||||||||| || ||  
gtatatatacaagaaatgtcatatcgaaatgcttctcagtaaaaccgttgatgattgttgttattctgcttcctcccctgatcttttacacggatctttgatctaatctgattacattagtggctaaacaatcgccgtcctttttttatcacagTCATTGCTATGTGATCCTAATCCGAATTCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAGAAGAGTCCGCGAGG

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G14400.2 (Arabidopsis thaliana), 3'ss of exon 5
gacatctagtgagcagcagctttaatttca--gttacaatattttgtcagttgcctgtgagggcatattctaatgggcatagttcttaaatgttttatc-cagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA
        ||||     |  |   || | |   |  |   ||    | |   || ||    |   | ||||  |       ||| ||   | | ||||  |||||| |||||||||| || || || || || ||||||||||| ||||| || || |||| ||| || |  ||||| || |||||||| |||||||||||  
--------gtgaattcaaaatgccatatgaacatctcttgatgcccttaaaagcttgaattgctttcttcttctctaatccgtttttccctttgttattgcagTCCTTGCTCTGTGACCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGCGAGTACAACAGGAGAGTGCGTGATG

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ17802 (Selaginella moellendorffii), 3'ss of exon 4
gacatctagtgagcagcagctttaatttcagttacaatattttgtcagttgcctgtgagggcatattctaatgggcatagttcttaaatgt-tttatc-cagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA
                              |||    | |||| ||  | |||| ||  || |||  ||           |||||| |  | |  ||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| ||||  || |||||    || || |||||| | ||||| || || |
------------------------------gtt-tggttttttttc--tcgcctttgttggaatagact-----------ttcttacacttatccatcgcagTCACTGCTTTGTGATCCTAACCCAAACTCGCCGGCAAACTCCGAAGCAGCACGGATGTATAGCGAGAACCGTCGAGAGTACAACCGGAGAGTCCGCGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814183|gb|FQ414802.1|FQ414802
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|351041390|gb|FQ447517.1|FQ447517
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCG
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|77584707|gb|DV221429.1|DV221429
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|71875929|gb|DT024984.1|DT024984
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|37185055|gb|CF604408.1|CF604408
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|34546986|gb|CF515218.1|CF515218
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAGCTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|351018739|gb|FQ425641.1|FQ425641
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|351049542|gb|FQ429164.1|FQ429164
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|351022236|gb|FQ438821.1|FQ438821
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|71884914|gb|DT033969.1|DT033969
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|37189198|gb|CF608547.1|CF608547
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|37189183|gb|CF608532.1|CF608532
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|71859196|gb|DT008251.1|DT008251
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|30302562|gb|CB979356.1|CB979356
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110370399|gb|EC929600.1|EC929600
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|71858776|gb|DT007831.1|DT007831
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|30256446|gb|CB972289.1|CB972289
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|34543081|gb|CF511313.1|CF511313
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|294966277|gb|GW837528.1|GW837528
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110392731|gb|EC957047.1|EC957047
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|45770976|gb|CN006828.1|CN006828
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110375657|gb|EC940666.1|EC940666
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|22012712|gb|BQ797746.1|BQ797746
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|161719498|gb|FC066422.1|FC066422
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|30301270|gb|CB978064.1|CB978064
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAGCCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|294966113|gb|GW837480.1|GW837480
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|161720625|gb|FC070235.1|FC070235
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|46917601|gb|CN546930.1|CN546930
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|349813320|gb|FQ411560.1|FQ411560
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|34547075|gb|CF515307.1|CF515307
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAGCTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|22013112|gb|BQ798146.1|BQ798146
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110410666|gb|EC976357.1|EC976357
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|22012179|gb|BQ797213.1|BQ797213
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110701165|gb|EE078466.1|EE078466
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|161719098|gb|FC065706.1|FC065706
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|351032605|gb|FQ462319.1|FQ462319
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|349821106|gb|FQ404359.1|FQ404359
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110696112|gb|EE074897.1|EE074897
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|27582933|gb|CB005628.1|CB005628
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110710849|gb|EE087378.1|EE087378
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|71857354|gb|DT006409.1|DT006409
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGC
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTG-ATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGC
EST: gi|71859730|gb|DT008785.1|DT008785
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110723791|gb|EE099055.1|EE099055
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|30302634|gb|CB979428.1|CB979428
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCCCTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTTTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110423496|gb|EC989842.1|EC989842
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|110720843|gb|EE097121.1|EE097121
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|161720454|gb|FC070566.1|FC070566
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA
EST: gi|30305437|gb|CB982231.1|CB982231
EST:     ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCGCCTGCAAACTCTGAAGCCGCA
genomic: ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAGgtgaaccttt ... ttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttgcctgtgagggcatattctaatgggcatagttcttaaatgttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA
                    ttctaat  putative branch site (score: 2)
                                             ttttatcc  putative PPT
                                   ttcttaaatgttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacatctagtgagcagcagctttaatttcagttacaatattttgtcagttgcctgtgagggcatattctaatgggcatagttcttaaatgttttatccagTCCCTGCTCTGTGATCCAAACCCAAACTCACCTGCAAACTCTGAAGCCGCACGCATGTTCAGTGAGAATAAGCGGGAATACAACAGAAGAGTGCGTGAAA

- - - - - - - agcagct
- - - - - - - - - - - - - - - - - - - - - - -cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgg