Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcacaatcctattcttgaattgcattcctggttatgcaatatagatcataaactgcttatgcgaatgtttctttttggcatctatctattactctctaggactatactaacaatgttgtttccacattagcatctaatctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG

Basic information

species Vitis vinifera
transcript Vv08s0032g00310.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 3'ss of exon 4
gtatgtcacaatcctattcttgaattgcattcctggttatgcaatatagatcataaactgcttatgcgaatgtttctttttggcatctatctattactctctaggactatactaacaatgttgtttccacattagcatctaatctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG
                                                                      || | ||| |  | |   |  |||    |  ||| |    | | | | |||||| ||  |||| |  | || | ||  |     ||  | |     ||  |||||||||| ||||| || || ||||| |||||  |||| || |||||||| || ||||||||||| || ||||||||||| |||||||||
----------------------------------------------------------------------tgctacttgtgtggaagcacttat-gtaccttagaatagca-tgatattgttgtatctccatttgt-tttactttcctaacattttccttttatcatgtacagTTTATGCTGATGGGAGCATATGCTTAGATATACTACAAAACCAGTGGAGCCCCATATATGATGTAGCTGCTATACTCACATCCATCCAG

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G110983_T02 (Zea mays), 3'ss of exon 3
gtatgtcacaatcctattcttgaattgcattcctggttatgcaatatagatcataaactgcttatgcgaatgtttctttttggcatctatctattactctctaggactatactaacaatgttgtttccacattagcatctaatctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG
                                                                                           | |||  || || ||   ||||| |  | |  |  |||| |     | | | | |||||    ||   ||  |      |||||||||| |||||||| || ||||| |||||  | ||||||||||||||||| ||||||||||| || || |||||||| || ||||||
-------------------------------------------------------------------------------------------tcttaa-ctatatgatggtactatct-tctaatgcccacttatatgtgtcacc-ctgacatttttctcatatg------cagtttatgctgatggaagcatatgcttagATATCCTGCAGAATCAGTGGAGTCCGATATATGATGTAGCTGCGATACTCACGTCAATCCAG

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G110983_T03 (Zea mays), 3'ss of exon 2
gtatgtcacaatcctattcttgaattgcattcctggttatgcaatatagatcataaactgcttatgcgaatgtttctttttggcatctatctattactctctaggactatactaacaatgttgtttccacattagcatcta-atctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG
                                                                         | || |     ||     ||  |||||||   |||||| | |   |  | | | |  ||   ||  || || | | ||        | |     |   |||||||||| |||||||| || ||||| |||||  | ||||||||||||||||| ||||||||||| || || |||||||| || ||||||
------------------------------------------------------------------------ctcctctggcttattctgatacaactctctta-actata-tgatggtactatcttctaatgcccacttatatgtgtcaccctgacatttttctcatatgcagTTTATGCTGATGGAAGCATATGCTTAGATATCCTGCAGAATCAGTGGAGTCCGATATATGATGTAGCTGCGATACTCACGTCAATCCAG

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G14400.2 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtcacaatcctattcttgaattgcattcctggttatgcaatatagatcataaactgcttatgcgaatgtttctttttggcatctatctattactctctaggactatactaacaatgttgtttccacattagcatctaatctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG
                                                             ||||    ||    | ||      |||||| |       |  ||   ||  | |   | |||  |||| |||| | |    |||    ||  ||| ||       ||   ||||||||||||||| ||||| |||||||| ||| |||| || ||||||||||| || |||||||| || |||||||| || |||||||||
--------------------------------------------------------gtaagttatagagatacaacattggattttctatcca-------cctggttgatgttca-gcttttgcctcca-attaacgt----tcttctgctctattcgt-------tgtgtagTTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAG

upper sequence: Vv08s0032g00310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatgtcacaatcctattcttgaattgcattcctggttatgcaatatagatcataaactgcttatgcgaatgtttctttttggcatctatctattactctctaggactatactaacaatgttgtttccacattagcatctaatctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG
                                                                      || || |  |  | |  | |  | | ||      |   || |              |  |||  |   ||  | ||  ||  |   ||  || |    |||||| || || || || || || |||||||||||||| || |||||||||||||| || || || |||||||| || || ||||| || |||
--------------------------------------------------------------------ggtgcttgtgctgaggacgtgtagagttcttggctcgtggatcccggaggcaga----cagcatgggtccctgttttcacac-actggtgattgtggcaaatcagTATACGCGGACGGCAGCATCTGCTTGGATATTTTGCAAAATCAGTGGAGTCCCATCTACGACGTGGCAGCGATCCTGACTTCGATTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814183|gb|FQ414802.1|FQ414802
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|351041390|gb|FQ447517.1|FQ447517
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|77584707|gb|DV221429.1|DV221429
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|71875929|gb|DT024984.1|DT024984
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|37185055|gb|CF604408.1|CF604408
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|34546986|gb|CF515218.1|CF515218
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|351018739|gb|FQ425641.1|FQ425641
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|351049542|gb|FQ429164.1|FQ429164
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|351022236|gb|FQ438821.1|FQ438821
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|71884914|gb|DT033969.1|DT033969
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|37189198|gb|CF608547.1|CF608547
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|37189183|gb|CF608532.1|CF608532
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|71859196|gb|DT008251.1|DT008251
EST:     AAATAAGCCTCCAACAGTCCGGTTTGCCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|30302562|gb|CB979356.1|CB979356
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110370399|gb|EC929600.1|EC929600
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|71858776|gb|DT007831.1|DT007831
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|30256446|gb|CB972289.1|CB972289
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|34543081|gb|CF511313.1|CF511313
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|294966277|gb|GW837528.1|GW837528
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGTTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110392731|gb|EC957047.1|EC957047
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|45770976|gb|CN006828.1|CN006828
EST:     AACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TATATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110375657|gb|EC940666.1|EC940666
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|22012712|gb|BQ797746.1|BQ797746
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|161719498|gb|FC066422.1|FC066422
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|294966113|gb|GW837480.1|GW837480
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|161720625|gb|FC070235.1|FC070235
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|46917601|gb|CN546930.1|CN546930
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|349813320|gb|FQ411560.1|FQ411560
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|34547075|gb|CF515307.1|CF515307
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|22013112|gb|BQ798146.1|BQ798146
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110410666|gb|EC976357.1|EC976357
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|22012179|gb|BQ797213.1|BQ797213
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110701165|gb|EE078466.1|EE078466
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|161719098|gb|FC065706.1|FC065706
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|351032605|gb|FQ462319.1|FQ462319
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|349821106|gb|FQ404359.1|FQ404359
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110696112|gb|EE074897.1|EE074897
EST:     AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|27582933|gb|CB005628.1|CB005628
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110710849|gb|EE087378.1|EE087378
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|71857354|gb|DT006409.1|DT006409
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|71859730|gb|DT008785.1|DT008785
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110723791|gb|EE099055.1|EE099055
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|30302634|gb|CB979428.1|CB979428
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCCCGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110423496|gb|EC989842.1|EC989842
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|110720843|gb|EE097121.1|EE097121
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|161720454|gb|FC070566.1|FC070566
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
EST: gi|30305437|gb|CB982231.1|CB982231
EST:     AAATAAGCCTCCAACAGTCCGGTTTGTCTCACGGATGTTTCATCCAAACA                         TTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC
genomic: AAATAAGCCTCCAACAGTCCGGTTCGTCTCACGGATGTTTCATCCAAACAgtatgtcaca ... gtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtttccacattagcatctaatctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG
                         ctctgac  putative branch site (score: 3)
                                   atttgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtcacaatcctattcttgaattgcattcctggttatgcaatatagatcataaactgcttatgcgaatgtttctttttggcatctatctattactctctaggactatactaacaatgttgtttccacattagcatctaatctctgactgcatttgtatgggtttgatcagTTTATGCAGATGGAAGTATTTGCTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACTTCCATCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT