Sequence
atgc intronic sequence ATGC exonic sequence...ttacatctactgttcattttttgtcaagattgttcggataagaaattagatcatacaatccaacttctgcgatttgagtttttgctcatcctttttacagGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 3'ss of exon 6
ttacatctactgttcattttttgtcaagattgttcggataagaa-------attagatcataca-atccaacttctgcgatttga----gtttttgctcatcctttttacagGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG
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gtacctcttacatatttagattgacgatggcattcaaatgtgactctccttgtcatatctcatatatgccctttctttgtactaaaaaagtatcttgcaatttttgatgtagGGAATTATTGTATTGGCTGCTACTAATCGCCCAAATGCAATTGATGCTGCTCTTCTGCGCCCAGGGCGTTTTGATATG
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g42110.1 (Oryza sativa), 3'ss of exon 10
ttacatctactgttcattttttgtcaagattgttcggataagaa-------attagatcataca-atccaacttctgcgatttga----gtttttgctcatcctttttacagGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG
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gtacctcttacatatttagattgacgatggcattcaaatgtgactctccttgtcatatctcatatatgccctttctttgtactaaaaaagtatcttgcaatttttgatgtagGGAATTATTGTATTGGCTGCTACTAATCGCCCAAATGCAATTGATGCTGCTCTTCTGCGCCCAGGGCGTTTCGATATG
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G13160.1 (Glycine max), 3'ss of exon 11
--------------------------------------------------------------ttacatctact-gttcattttttgtcaa---gattgttcggataagaaattagatc-------------atacaatccaacttctgc---gatttgagtttttgctcatcctttttacagGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG
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gtaagtatgcctttttcttctttgatgtttgttttaatgacattttatcctctccctgtccttttcctccacccatgaattctttatcaaaaggaaaaagcaagcataaaactgtattcaagagatggtaggcatcatctagtttctttctggctattaactagatctttattttttttcagGGAATTCTTGTTTTGGCAGCTACAAATCGCCCCTATGCAATTGATGCTGCACTCATGCGTCCTGGGCGTTTTGATCTG
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G03670.1 (Arabidopsis thaliana), 3'ss of exon 10
ttacatctactgttcattttttgtcaagattgttcggataagaaattagatcatacaatccaacttctgcgatttga-gtttttgctcatccttt--ttacagGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG
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-------------------gtaaacaaaa--gctc--ataggcttttaaagattttatctttgttattgggttgcaatgatattgatcgggttttggtttaagGGAATCCTCGTCTTGGCTGCCACAAACCGCCCGTATGCAATTGATGCTGCTCTAATGCGACCTGGTCGATTTGATCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagatcatacaatccaacttctgcgatttgagtttttgctcatcctttttacagGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG
tttttgctcatccttt CT-rich tract
tttttaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttacatctactgttcattttttgtcaagattgttcggataagaaattagatcatacaatccaacttctgcgatttgagtttttgctcatcctttttacagGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- -catctac
- - - - - - - - - - - - - - - - - - -ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctgc