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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcaacttggcctggttttgggttgaaaaaaacttgagagtttattttttttctttttaccttttgttgtgtttggatggtgagaatcatgactgagacttgaaaaattatgcagGAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTTCCTGCAAACCAAGATCCGAAAGCCTTGATCTTCATCCTCCATGGTTATG

Basic information

species Vitis vinifera
transcript Vv00s0317g00110.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726784|gb|EE102868.1|EE102868
EST:     GCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAG                         GAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
genomic: GCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAGgttagtcaac ... aattatgcagGAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
EST: gi|110699813|gb|EE077156.1|EE077156
EST:     GCGGGCGAAATGAGAAATCATGTAAAGTATGAAGAG                         GAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
genomic: GCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAGgttagtcaac ... aattatgcagGAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
EST: gi|110389675|gb|EC954532.1|EC954532
EST:     CTTTCATGGCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAG                         GAACATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
genomic: CTTTCATGGCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAGgttagtcaac ... aattatgcagGAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
EST: gi|110381666|gb|EC935070.1|EC935070
EST:     TTCATGGCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAG                         GAACATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
genomic: TTCATGGCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAGgttagtcaac ... aattatgcagGAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
EST: gi|110699143|gb|EE075883.1|EE075883
EST:     GCGGGCGAAATGAGAAATCATGTAAAGTATGAAGAG                         GAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT
genomic: GCGGGCGAAATGAGAAATCATGTGAAGTATGAAGAGgttagtcaac ... aattatgcagGAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgttgtgtttggatggtgagaatcatgactgagacttgaaaaattatgcagGAATATATATTGAATTCTCGAGGACTGAAGCTCTTCACATGCAGATGGTTTCCTGCAAACCAAGATCCGAAAGCCTTGATCTTCATCCTCCATGGTTATG
                                     acttgaaaaattat  TA-rich tract