1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tggacagaatatgttaggcctaataaaatgtgtaagccagtaaacatatatatgaagagtttcttttggttagcattaagaatttttatggtatttgtagATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGGTAATGAAGATGGGTTACATATAAGCTGTGTGGCCTCTTCATCAAATCTT
species | Vitis vinifera |
transcript | Vv08s0007g07420.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GACCCAGT-GATCNATCAGTTTACAATGCACGTCGTCCCATGAAGCAGAG ATATCACCACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGGEST: gi|37190348|gb|CF609697.1|CF609697
genomic: GACCCAGTGGAT--ATCAGTTTACAATGCACGTCGTCCCATGAAGCAGAGgtaaatggat ... gtatttgtagATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGG
EST: GCGACCCAGTGGATATCAGTTTACAATGCGCGTCGTCCCATGAAGCAGAG ATATCACTACAATGTAGCAGACTCAAGGCTGTCTCAGCACGTAGAGAAGGGEST: gi|71861343|gb|DT010398.1|DT010398
genomic: GCGACCCAGTGGATATCAGTTTACAATGCACGTCGTCCCATGAAGCAGAGgtaaatggat ... gtatttgtagATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGG
EST: GCGACCCAGTGGATATCAGTTTACAATGCGCGTCGTCCCATGAAGCAGAG ATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGGEST: gi|37190390|gb|CF609739.1|CF609739
genomic: GCGACCCAGTGGATATCAGTTTACAATGCACGTCGTCCCATGAAGCAGAGgtaaatggat ... gtatttgtagATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGG
EST: GCGACCCAGTGGATATCAGTTTACAATGCGCGTCGTCCCATGAAGCAGAG ATATCACTACAATGTAGCAGACTCAAGGCTGTCTCAGCACGTAGAGAAGGG
genomic: GCGACCCAGTGGATATCAGTTTACAATGCACGTCGTCCCATGAAGCAGAGgtaaatggat ... gtatttgtagATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGG
atatatatgaagagtttcttttggttagcattaagaatttttatggtatttgtagATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGGTAATGAAGATGGGTTACATATAAGCTGTGTGGCCTCTTCATCAAATCTT
attaagaatttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggacagaatatgttaggcctaataaaatgtgtaagccagtaaacatatatatgaagagtttcttttggttagcattaagaatttttatggtatttgtagATATCACTACAATGTAGCAGACTCAAGGCTGCCTCAGCACGTAGAGAAGGGTAATGAAGATGGGTTACATATAAGCTGTGTGGCCTCTTCATCAAATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- -acagaata
- - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - taagcca
- - - - - - - - - - - - - - - - - - - - -aaacata