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...tagaagttatattatttccactaagatgttaaaaaaaaatatatgaaaagaaaaaagaaaagaaagatctgaatttgatgagtattctgcttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCACCAGGCAGAGTTAGTAACTTCACCATCCCTCGAGGAAATCGTACATTAT
species | Vitis vinifera |
transcript | Vv17s0000g08390.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCAEST: gi|110373236|gb|EC937455.1|EC937455
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCAEST: gi|110421053|gb|EC987340.1|EC987340
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACTTGTGATAAGCAEST: gi|18458037|gb|BM436315.1|BM436315
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCAEST: gi|110707087|gb|EE083191.1|EE083191
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCAEST: gi|110400497|gb|EC967061.1|EC967061
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAGAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCAEST: gi|110426317|gb|EC992722.1|EC992722
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACTTGTGATAAGCAEST: gi|110392719|gb|EC957016.1|EC957016
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAGAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCAEST: gi|110390668|gb|EC955591.1|EC955591
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
EST: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAA GATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
genomic: GTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatgtaatt ... ttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCA
aaaagaaaaaagaaaagaaagatctgaatttgatgagtattctgcttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCACCAGGCAGAGTTAGTAACTTCACCATCCCTCGAGGAAATCGTACATTAT
atttgat putative branch site (score: 5)
ttctgcttgctttc putative PPT
aaaaaagaaaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaagttatattatttccactaagatgttaaaaaaaaatatatgaaaagaaaaaagaaaagaaagatctgaatttgatgagtattctgcttgctttcagGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCACCAGGCAGAGTTAGTAACTTCACCATCCCTCGAGGAAATCGTACATTAT
- - - - - - - - -ccactaa
- - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgc