1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttccagattaaacaataaatatggtgtgaaaataatgaaaacttgcaatcagtttattagtttgcttgacatgattgaaattggaatggaatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATGGATCTTGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGAGTT
species | Vitis vinifera |
transcript | Vv17s0000g08390.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATEST: gi|110373236|gb|EC937455.1|EC937455
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATEST: gi|18458037|gb|BM436315.1|BM436315
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATEST: gi|110707087|gb|EE083191.1|EE083191
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATEST: gi|110400497|gb|EC967061.1|EC967061
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATEST: gi|110426317|gb|EC992722.1|EC992722
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATEST: gi|110392719|gb|EC957016.1|EC957016
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATEST: gi|110390668|gb|EC955591.1|EC955591
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
EST: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAA GCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
genomic: GACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAgtgagtacta ... aatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCAT
gcaatcagtttattagtttgcttgacatgattgaaattggaatggaatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATGGATCTTGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGAGTT
gcttgac putative branch site (score: 4)
tttattagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccagattaaacaataaatatggtgtgaaaataatgaaaacttgcaatcagtttattagtttgcttgacatgattgaaattggaatggaatggtgcagGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATGGATCTTGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - aaacaat
- - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - tgaaaac
- - - - - - - - - - - - - - - - - - - - - - -gcaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatt