1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaagcccaaaaagcttttctcaacttgggaaattttttaccaactttttttctcttttggtttctgtaaagtgatcttgatttcttcctttctgatgcagCAAATCAAGGCCTAGCAACACTAGCTTTCTTTGGAGTTGGAGTGAACTTGGTTTTGTTCTTAACCAGAGTTCTTTCTCAAGACAATGCTAATGCTGCCAA
species | Vitis vinifera |
transcript | Vv06s0004g01300.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttttttctcttttggtttctgtaaagtgatcttgatttcttcctttctgatgcagCAAATCAAGGCCTAGCAACACTAGCTTTCTTTGGAGTTGGAGTGAACTTGGTTTTGTTCTTAACCAGAGTTCTTTCTCAAGACAATGCTAATGCTGCCAA
ttctgat putative branch site (score: 3)
tcttgatttcttcctt CT-rich tract
ttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcccaaaaagcttttctcaacttgggaaattttttaccaactttttttctcttttggtttctgtaaagtgatcttgatttcttcctttctgatgcagCAAATCAAGGCCTAGCAACACTAGCTTTCTTTGGAGTTGGAGTGAACTTGGTTTTGTTCTTAACCAGAGTTCTTTCTCAAGACAATGCTAATGCTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - cccaaaa
- - - - - - - - -tctcaac
- - - - - - - - - - - - ttgggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttcc