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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatttttctgccatcaacattgtggatgctgaaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtagGTGGCAATTTGGCGTGATTCTGCGCGCAGAAGATTAGTTGTTGCTTTCAGGGGAACAGAACAA

Basic information

species Vitis vinifera
transcript Vv05s0077g00480.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G20890.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------------------gtaaagatttttctgccatcaacattgtgg-atgctg--aaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtagGTGGCAATTTGGCGTGATTCTGCGCGCAGAAGATTAGTTGTTGCTTTCAGGGGAACAGAACAA
                                                               ||   |   |||    ||| |  |||||  ||  ||  ||   |  |||      ||  ||||    |  || ||| || | |  ||  |||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| 
gtgttttcttatatcctcttcaataagtccacttctctattttttatgattttttcaattgtttatgtagcattcaaaaatccat-ttgtgatatattgtcaatgtcttattctatggactggtttctattttctaagttattagaactttcagGTTGCAATTTGGCGTGATTCTGCGCGAAGAAGGTTAGTGGTTGCTTTTAGGGGAACAGAACAG

upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G00920.1 (Glycine max), 3'ss of exon 4
--------------------------------------------------------------gtaaagatttttctgccatcaacattgtgg-atgctg--aaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtagGTGGCAATTTGGCGTGATTCTGCGCGCAGAAGATTAGTTGTTGCTTTCAGGGGAACAGAACAA
                                                               ||   |   |||    ||| |  |||||  ||  ||  ||   |  |||      ||  ||||    |  || ||| || | |  ||  |||| |||||||||||||||||||| || ||||| ||||| |||||||| |||||||||||||| 
gtgttttcttatatcctcttcaaaaagtccacttctctattttttatgattttttcaattgtttatgtagcattcaaaaatccat-ttgtgatatattgtcaatgtcttattctatggactggtttctattttctaagttattagaactttcagGTTGCAATTTGGCGTGATTCTGCACGAAGAAGGTTAGTGGTTGCTTTTAGGGGAACAGAACAG

upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G26510.1 (Glycine max), 3'ss of exon 1
------------------------------------------------------gtaaagatttttctgccatc---aacattgtggatgctgaaccgcaaatttctga-------aacatgttttgtctcactgagtcataaaatgttgtagGTGGCAATTTGGCGTGATTCTGCGCGCAGAAGATTAGTTGTTGCTTTCAGGGGAACAGAACAA
                                                        ||   ||| | |  |||    ||   | |   || |  |  || ||| ||| |        ||  ||||    |  || || ||| | |  ||  |||| ||||||||||||||||| ||| | ||||| ||||| |||||||| |||||||||||||| 
gtgttttgttatatcctcttcaataagttcacttctctattttttatgattttttcaattgtttatgtaacattcaaaaatctatttgtgatatattgccaatatcttattccatggactggtttctattttctaagccattagAACTTTCAGGTTGCAATTTGGCGTGATTCCGCGAGAAGAAGGTTAGTGGTTGCTTTTAGGGGAACAGAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtagGTGGCAATTTGGCGTGATTCTGCGCGCAGAAGATTAGTTGTTGCTTTCAGGGGAACAGAACAA
                            gtctcac  putative branch site (score: 3)
                                         ataaaatgtt  TA-rich tract