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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccttcccaatctatacctttattccttttcttttattattttcctctctctatcaagcattgaattaggaattaccaggggttcatacggttgatctgatgaaaccttgtggtgatctggtgatttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG

Basic information

species Vitis vinifera
transcript Vv01s0150g00610.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00610.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g63450.1 (Oryza sativa), 3'ss of exon 1
gttccttcccaatctatacctttattccttttcttttattattttcctctctctatcaagcattgaattaggaattaccaggggttcatacggttgatctgatgaaaccttgtggtgatctggtgatttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
                          ||  |     |   ||  ||   | ||||    |||     | | || | |  |       | | | ||| ||        | |  || || |     | ||  |||||||| ||||||||| ||||||| ||||||||||| ||||
--------------------------ccaatgacgctcagatcctcacatttctagtg-gcacactctcaagagtcaagacacaaaaagaagtttgttc--------cttgctgatgtttcacggtttcttgtagGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730505|gb|EE107661.1|EE107661
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|27755329|gb|CB036084.1|CB036084
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|83274626|gb|DV938723.1|DV938723
EST:     CAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: CAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|30127142|gb|CB912481.1|CB912481
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|27755332|gb|CB036087.1|CB036087
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|351021519|gb|FQ446063.1|FQ446063
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|27755334|gb|CB036089.1|CB036089
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|71872275|gb|DT021330.1|DT021330
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110380501|gb|EC945772.1|EC945772
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110382421|gb|EC939438.1|EC939438
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110700959|gb|EE078071.1|EE078071
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110400063|gb|EC966605.1|EC966605
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110387237|gb|EC951891.1|EC951891
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110409583|gb|EC975249.1|EC975249
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|351026810|gb|FQ436463.1|FQ436463
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110383667|gb|EC948050.1|EC948050
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|34362920|gb|CF404505.1|CF404505
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110715660|gb|EE093965.1|EE093965
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110398620|gb|EC965089.1|EC965089
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|34319852|gb|CF372606.1|CF372606
EST:     ATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: ATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|349820141|gb|FQ404863.1|FQ404863
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|351024248|gb|FQ423671.1|FQ423671
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110365672|gb|EC929043.1|EC929043
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110374352|gb|EC939041.1|EC939041
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|46910258|gb|CN545633.1|CN545633
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|349828318|gb|FQ416271.1|FQ416271
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|110366297|gb|EC930122.1|EC930122
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
EST: gi|349821699|gb|FQ413015.1|FQ413015
EST:     AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTG                         GTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
genomic: AGGATCCCTGATAACATCGTCAAACATGAGGATTCCCTCCCCATCCCCTGgttccttccc ... atttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggttcatacggttgatctgatgaaaccttgtggtgatctggtgatttgtgtagGTACCATGCCAACCGGATGCTTAGCTTTTATGCCCCAG
                atctgat  putative branch site (score: 4)