Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacgatggagaaatgaaactcgaaatatttgattttgtttcttctatttggcaaaagcatgtttcctgatccgttcttttgtgttttggatgtgaaaatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGGTGCAGTTGAAGGAGTTGAAGGCCGAACTTGCTCTTCTCCGAGTTGCCAA

Basic information

species Vitis vinifera
transcript Vv00s0317g00130.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0317g00130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G55170.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaa--tacgatggagaaatgaaactcgaaatatttgattttgtttcttctatttggcaaaagcatgtttcctgatccgttcttttgtgttttggatgtgaaaatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGGTGCAGTTGAAGGAGTTGAAGGCCGAACTTGCTCTTCTCCGAGTTGCCAA
||||    | |      ||| |    |   ||  ||| ||  ||| ||| | ||||||     ||| |||| |  |  ||| | |||   |  ||||  |  ||     |||||||||||||||||||||||||||| |  ||| | ||  ||||  | |     || ||||| || |||||||| || ||||||   || || || || ||
gtaagtccctactcttgaatcatttccaccattattgtttgagttgcttatgtttggctc---cat-tttcttattgtgttgtgttgaaat--ggatccgtgaa-----cagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAGAATTGAAGGCAGAGCTTGCTTCCCTACGTGTCGCTAA

upper sequence: Vv00s0317g00130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G39390.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaatacgatggagaaatgaaactcgaaatatttgattttgtt--tcttctatttggcaaaagcatgtttcctgatccgttcttttgtgttttggatgtgaaaatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGGTGCAGTTGAAGGAGTTGAAGGCCGAACTTGCTCTTCTCCGAGTTGCCAA
          | |    | ||     |||  |||   | ||||      | |||| | |     | |||    |||  | |  ||| | || || |  || ||    ||||||||||||||||||||||||| ||||||  ||| | || || ||  | | ||  ||||||||||| || ||||| || |||||||| || || || || ||
----------gtaagcctaaattctcaaactttttcctctgttaacacacaatttcgtacgtttaggttatgagatttgat--tttatattgtgaa-atggaatctgaacagCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAAAAGCTGATCTTTCGGGTCAGTTGAAGGAATTTAAGGCAGAGCTTGCTCTCCTTCGTGTCGCTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110695137|gb|EE072810.1|EE072810
EST:     AGAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110376524|gb|EC941587.1|EC941587
EST:     CGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: CGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|351031179|gb|FQ445006.1|FQ445006
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCCCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|37184933|gb|CF604286.1|CF604286
EST:     GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110687535|gb|EE065055.1|EE065055
EST:     GAGAGGAAGAGGGAGGATCCGCCCTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110703165|gb|EE079770.1|EE079770
EST:     AGAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAAGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|37188979|gb|CF608328.1|CF608328
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110379648|gb|EC944860.1|EC944860
EST:     GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110686868|gb|EE063790.1|EE063790
EST:     GAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110372819|gb|EC937013.1|EC937013
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110387809|gb|EC952507.1|EC952507
EST:     GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30303301|gb|CB980095.1|CB980095
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGTTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGATCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110425505|gb|EC991891.1|EC991891
EST:     AGAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110401677|gb|EC968293.1|EC968293
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|34319356|gb|CF372110.1|CF372110
EST:     GGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|26262815|gb|CA813878.1|CA813878
EST:     CCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: CCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|71869333|gb|DT018388.1|DT018388
EST:     GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110690634|gb|EE067975.1|EE067975
EST:     AGAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110689358|gb|EE065512.1|EE065512
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110717557|gb|EE093520.1|EE093520
EST:     GGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: GGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110395009|gb|EC960492.1|EC960492
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30329993|gb|CD013255.1|CD013255
EST:     GAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: GAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110693877|gb|EE070492.1|EE070492
EST:     AGAGTGGGACAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110397537|gb|EC963285.1|EC963285
EST:     GGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGG-AAAACTAAGGCGGACTTGTTGG
genomic: GGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|37187582|gb|CF606935.1|CF606935
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|28970509|gb|CB349542.1|CB349542
EST:     GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110394160|gb|EC958737.1|EC958737
EST:     AGAGAGGGAGAGGGAGGAGCCGCCTTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30298212|gb|CB975006.1|CB975006
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCGAGGGTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110708924|gb|EE083936.1|EE083936
EST:     AGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|161709026|gb|FC060952.1|FC060952
EST:     AGAGAGGGAGAGGGAGGACCCGCCATTGTAGCTCAGAGTCCCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110399407|gb|EC965911.1|EC965911
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110381437|gb|EC934458.1|EC934458
EST:     GAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110422003|gb|EC988312.1|EC988312
EST:     GGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110401995|gb|EC968625.1|EC968625
EST:     GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|46917670|gb|CN546999.1|CN546999
EST:     AGAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30127942|gb|CB913281.1|CB913281
EST:     GGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110370745|gb|EC932830.1|EC932830
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110695896|gb|EE074433.1|EE074433
EST:     AGAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110686510|gb|EE064230.1|EE064230
EST:     GAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110367727|gb|EC931678.1|EC931678
EST:     AGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|77580125|gb|DV218957.1|DV218957
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110414771|gb|EC980624.1|EC980624
EST:     GCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: GCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110693141|gb|EE069112.1|EE069112
EST:     AGATAGGGAGCGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110685693|gb|EE062634.1|EE062634
EST:     ACAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110423563|gb|EC989910.1|EC989910
EST:     GCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: GCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30329536|gb|CD012798.1|CD012798
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110729939|gb|EE106447.1|EE106447
EST:     AGAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110361827|gb|EC925327.1|EC925327
EST:     GAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110726226|gb|EE101820.1|EE101820
EST:     CAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: CAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110729942|gb|EE106458.1|EE106458
EST:     GGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: GGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110696755|gb|EE073148.1|EE073148
EST:     AGAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30303233|gb|CB980027.1|CB980027
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGATCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110733201|gb|EE109184.1|EE109184
EST:     AGAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110695070|gb|EE072663.1|EE072663
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110686466|gb|EE064138.1|EE064138
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAAAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|28970429|gb|CB349462.1|CB349462
EST:     CCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: CCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|27584107|gb|CB006802.1|CB006802
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110687243|gb|EE064481.1|EE064481
EST:     GAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|37188265|gb|CF607614.1|CF607614
EST:     AGAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110690006|gb|EE066727.1|EE066727
EST:     AGAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|37185047|gb|CF604400.1|CF604400
EST:     GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110707215|gb|EE083431.1|EE083431
EST:     AGAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|22011661|gb|BQ796695.1|BQ796695
EST:     CCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: CCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110388375|gb|EC953117.1|EC953117
EST:     GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: GGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|351026975|gb|FQ436628.1|FQ436628
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110686670|gb|EE064574.1|EE064574
EST:     AGAGAGGAAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30306069|gb|CB982863.1|CB982863
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110417615|gb|EC983685.1|EC983685
EST:     AGAGAGGGAGAGGGAGGAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110393411|gb|EC958630.1|EC958630
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110380393|gb|EC945656.1|EC945656
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|30306261|gb|CB983055.1|CB983055
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGCAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110728719|gb|EE104533.1|EE104533
EST:     GAGCCGCCGTTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACAAAGGCGGACTTGTTGG
genomic: GAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110391434|gb|EC956410.1|EC956410
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
EST: gi|110687290|gb|EE064569.1|EE064569
EST:     AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGG                         CGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG
genomic: AGAGAGGGAGAGGGAGGAGCCGCCATTGTAGCTCAGAGTCGCAGCCATGGgtaatacgat ... aatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaagcatgtttcctgatccgttcttttgtgttttggatgtgaaaatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGGTGCAGTTGAAGGAGTTGAAGGCCGAACTTGCTCTTCTCCGAGTTGCCAA
            tcctgat  putative branch site (score: 3)
                                           aaaatacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatacgatggagaaatgaaactcgaaatatttgattttgtttcttctatttggcaaaagcatgtttcctgatccgttcttttgtgttttggatgtgaaaatacaacagCGAGAATCAAGGTTCATGAGTTGAGGGGAAAAACTAAGGCGGACTTGTTGGTGCAGTTGAAGGAGTTGAAGGCCGAACTTGCTCTTCTCCGAGTTGCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG