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gtaaactgtgtttttctttcccttcaagaatgtaactcttttttttcccgattcctttttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTGGAGAAAATGCACGAGCAGGG
species | Selaginella moellendorffii |
transcript | EFJ13521 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAAC CATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTEST: gi|169070416|gb|FE476781.1|FE476781
genomic: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAACgtaaactgtg ... ttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCT
EST: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAAC CATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTEST: gi|169047461|gb|FE455656.1|FE455656
genomic: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAACgtaaactgtg ... ttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCT
EST: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAAC CATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTEST: gi|169071027|gb|FE476352.1|FE476352
genomic: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAACgtaaactgtg ... ttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCT
EST: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAAC CATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTEST: gi|169055838|gb|FE465079.1|FE465079
genomic: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAACgtaaactgtg ... ttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCT
EST: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAAC CATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTEST: gi|169034150|gb|FE444275.1|FE444275
genomic: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAACgtaaactgtg ... ttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCT
EST: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAAC CATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCT
genomic: GACATGCTTGGGCCTAGCCTTTGGGACATTTGGAACTCCACCGGTCAAACgtaaactgtg ... ttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCT
ttctttcccttcaagaatgtaactcttttttttcccgattcctttttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTGGAGAAAATGCACGAGCAGGG
atgtaac putative branch site (score: 26)
taactcttttttttcc CT-rich tract
taactctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactgtgtttttctttcccttcaagaatgtaactcttttttttcccgattcctttttgtttccagCATGTCCAACAACATGGTGGCTTGCATTGCTGTCGAAGCAATAGCTATTCTGGAGAAAATGCACGAGCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG