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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggttctccattttgtaaacttcagtcagtgacattgttcttccagATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGACAGAGCCTGTGGATCAACGGCTCCATCTCCATCGCCTCGTTTCTCATCT

Basic information

species Selaginella moellendorffii
transcript EFJ32560
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169088690|gb|FE495996.1|FE495996
EST:     CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAAC                         ATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGA
genomic: CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAACgtaagtggtt ... gttcttccagATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGA
EST: gi|169088691|gb|FE495997.1|FE495997
EST:     CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAAC                         ATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGA
genomic: CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAACgtaagtggtt ... gttcttccagATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGA
EST: gi|169036306|gb|FE445723.1|FE445723
EST:     CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAAC                         ATTGGGAGCTTGTACCAGACCGATTACACCTCGTTCGAGCAGTACATCGGA
genomic: CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAACgtaagtggtt ... gttcttccagATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGA
EST: gi|169082639|gb|FE486198.1|FE486198
EST:     CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAAC                         ATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGA
genomic: CTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAACgtaagtggtt ... gttcttccagATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 20

TTAATGTTCTCGCTTTGAGCCTAGCAAACTTGATCGCGGGATTGATCACGCTCTTCCATAACgtaagtggtt ... gttcttccagATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGACAGAGCCTGTGGATCAACGGCTCCATCTCCATCGCCTCGTTTCTCATCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtggttctccattttgtaaacttcagtcagtgacattgttcttccagATCGGGAGCTTGTACCAGAACGATTACACCTCGTTCGAGCAGTATATCGGACAGAGCCTGTGGATCAACGGCTCCATCTCCATCGCCTCGTTTCTCATCT
                                              ttgttcttcc  CT-rich tract
                  attttgtaaa  TA-rich tract