Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccctcgttttctttctcgatcgagcttccattttctcacatttcgtgttttccagtccagagCTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGCCCTTTCATCGAGGACACCGCGGTCGTGATTGGATCCAAAGCTCTCATCA

Basic information

species Selaginella moellendorffii
transcript EFJ14900
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169057993|gb|FE463927.1|FE463927
EST:     TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGA-G-----AG                         CTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
genomic: TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGAGGTTCTCTTgtccctcgtt ... cagtccagagCTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
EST: gi|169057994|gb|FE463928.1|FE463928
EST:     TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGA-G-----AG                         CTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
genomic: TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGAGGTTCTCTTgtccctcgtt ... cagtccagagCTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
EST: gi|169042399|gb|FE452908.1|FE452908
EST:     TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGA-GTCCAGAG                         CTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
genomic: TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGAGGTTCTCTTgtccctcgtt ... cagtccagagCTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
EST: gi|169042398|gb|FE452907.1|FE452907
EST:     TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGA-GTCCAGAG                         CTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
genomic: TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGAGGTTCTCTTgtccctcgtt ... cagtccagagCTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC
EST: gi|169056219|gb|FE464068.1|FE464068
EST:     TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGA-GTCCAGAG                         CTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAATTCCCCGACTGC
genomic: TCGCGAGAAAGCAGCATTCGGATTACGTGAACATCCTGAGAGGTTCTCTTgtccctcgtt ... cagtccagagCTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttctcgatcgagcttccattttctcacatttcgtgttttccagtccagagCTCGTCGATCACGTCGTGGAGCTCTCACCGATGGACGAGTTCCCCGACTGCCCTTTCATCGAGGACACCGCGGTCGTGATTGGATCCAAAGCTCTCATCA
                         ttctcac  putative branch site (score: 2)
                                      tgttttcc  putative PPT
                      attttct  TA-rich tract