Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|70670090|gb|DN838667.1|DN838667EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169037226|gb|FE445447.1|FE445447EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169083969|gb|FE493609.1|FE493609EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169115830|gb|FE517609.1|FE517609EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169036096|gb|FE445136.1|FE445136EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169040064|gb|FE448909.1|FE448909EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169096986|gb|FE500054.1|FE500054EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169057611|gb|FE463662.1|FE463662EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGG
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGG
EST:
gi|169061301|gb|FE470388.1|FE470388EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169038917|gb|FE449634.1|FE449634EST: TCAGGATCCTCTCTGTNCA-TGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TCAGGATCCTCTCTGT-CAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169115235|gb|FE515638.1|FE515638EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|169022956|gb|FE431543.1|FE431543EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST:
gi|70669740|gb|DN838317.1|DN838317EST: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGGTTTGAGATCTCTGTTTCCGTCCGAGCATGGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGG-TTTGAGATCTCTGTT-CCGTCGGAGCATGGT
EST:
gi|169099533|gb|FE501045.1|FE501045EST: TCAGGATCCTCTCTGTNCA-TGGTGCCGAATGCTTCATCACTAGAACCGG GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTNCG-AGCATGGTG
genomic: TCAGGATCCTCTCTGT-CAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGT-CGGAGCATGGTG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
35 (upstream exon),
34 (downstream exon)
Score:
46CACTACAGCATCTGGTGAAGGAGGATTTGAGCAAAGTCTACTTTGGAAACTTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGTGGAGCTGGCGAAGGCACTTCTGGAGAAGTCGGAGGGGAAGATCCTTCTC
<
<
<