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...aagatatttctagaatggcttggaagtttccactacctagagtgatcttgataaattttcttgtagtaaaaggacaaccatattcggaacttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTATTGCTTCAATTTCTGACATCAAGTTTGCAAGAGGTGGTCGGTACATTCTA
species | Physcomitrella patens |
transcript | PP1S100_124V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCT GTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTATEST: gi|7648411|gb|AW739394.1|AW739394
genomic: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCTgtatgttcct ... ttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTAT
EST: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCT GTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTATEST: gi|15730306|gb|BI741781.1|BI741781
genomic: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCTgtatgttcct ... ttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTAT
EST: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCT GTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTATEST: gi|162182432|gb|FC358031.1|FC358031
genomic: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCTgtatgttcct ... ttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTAT
EST: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCT GTTTGAGGAGAATGAGCCGGCTGGAGCGAGGTCGTTTTTCACAGAAATTATEST: gi|67725006|gb|BJ975265.1|BJ975265
genomic: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCTgtatgttcct ... ttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTAT
EST: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCT GTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTAT
genomic: CGCCTCATCGATATGCGTCAATCAGCCTTATGTGATCGACACTCAAAGCTgtatgttcct ... ttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTAT
tcttgataaattttcttgtagtaaaaggacaaccatattcggaacttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTATTGCTTCAATTTCTGACATCAAGTTTGCAAGAGGTGGTCGGTACATTCTA
tcttgat putative branch site (score: 4)
ataaattttcttgtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagatatttctagaatggcttggaagtttccactacctagagtgatcttgataaattttcttgtagtaaaaggacaaccatattcggaacttgtgtgcagGTTTGAGGAGAATGAGCCTGCTGGAGCGAGGTCGTTTTTCACAGAAATTATTGCTTCAATTTCTGACATCAAGTTTGCAAGAGGTGGTCGGTACATTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG