1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gaccattcgaatcacaaaggctctagctttttaaaattaattgctcctcatctcatgatatcgtctctgctggacactaataatggaagcatacattcagGTGGCCATGGAACAATTTAGTGAAGCAACTGTTGGTTACAAAGCAGATACCAGTATAGCGAAATCTTGGGTCCAAGCTTTTGCCACTCCATATTTTCATG
species | Physcomitrella patens |
transcript | PP1S99_87V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTAGGCATCGACTGTTCGGTACTTATGGGAGCAAATATTGCAAATGAG GTGGCCATGGAACAATTTAGTGAAGCAACTGTTGGTTACAAAGCAGATACCEST: gi|100407580|gb|BY991764.1|BY991764
genomic: ACCTAGGCATCGACTGTTCGGTACTTATGGGAGCAAATATTGCAAATGAGgtacgaaatt ... atacattcagGTGGCCATGGAACAATTTAGTGAAGCAACTGTTGGTTACAAAGCAGATACC
EST: ACCTAGGCATCGACTGTTCGGTACTTATGGGAGCAAATATTGCAAATGAG GTGGCCATGGAACAATTTAGTGAAGCAACTGTTGGTTACAAAGCAGATACC
genomic: ACCTAGGCATCGACTGTTCGGTACTTATGGGAGCAAATATTGCAAATGAGgtacgaaatt ... atacattcagGTGGCCATGGAACAATTTAGTGAAGCAACTGTTGGTTACAAAGCAGATACC
cctcatctcatgatatcgtctctgctggacactaataatggaagcatacattcagGTGGCCATGGAACAATTTAGTGAAGCAACTGTTGGTTACAAAGCAGATACCAGTATAGCGAAATCTTGGGTCCAAGCTTTTGCCACTCCATATTTTCATG
cactaat putative branch site (score: 4)
actaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccattcgaatcacaaaggctctagctttttaaaattaattgctcctcatctcatgatatcgtctctgctggacactaataatggaagcatacattcagGTGGCCATGGAACAATTTAGTGAAGCAACTGTTGGTTACAAAGCAGATACCAGTATAGCGAAATCTTGGGTCCAAGCTTTTGCCACTCCATATTTTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgga