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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtttatcaatgcttgttatcattttttgagatgctttttgatttatccgttgatattggttaaattatttcagttaacaagtgtccttgtacttgcagCTTTTACTGTGGTCAAGGATGCACTCCATGATACCTGGAATTTGCGGAATAATTGCTGGGTTTATCTATAGATGTGATCTGGGCGGAATACAGGAAATAG

Basic information

species Physcomitrella patens
transcript PP1S6_214V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162235926|gb|FC411669.1|FC411669
EST:     TTGGGATCAAAGTATCTGAGAAGTCCTTCGTTTATTTGATCGGTCTTCAG                         CTTTTACTGTGGTCAAGGATGCACTCCATGATACCTGGAATTTGCGGAATA
genomic: TTGGGATCAAAGTATCTGAGAAGTCCTTCGTTTATTTGATCGGTCTTCAGgttagtagtt ... gtacttgcagCTTTTACTGTGGTCAAGGATGCACTCCATGATACCTGGAATTTGCGGAATA
EST: gi|162235927|gb|FC411670.1|FC411670
EST:     TTGGGATCAAAGTATCTGAGAAGTCCTTCGTTTATTTGATCGGTCTTCAG                         CTTTTACTGTGGTCAAGGATGCACTCCATGATACCTGGAATTTGCGGAATA
genomic: TTGGGATCAAAGTATCTGAGAAGTCCTTCGTTTATTTGATCGGTCTTCAGgttagtagtt ... gtacttgcagCTTTTACTGTGGTCAAGGATGCACTCCATGATACCTGGAATTTGCGGAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccgttgatattggttaaattatttcagttaacaagtgtccttgtacttgcagCTTTTACTGTGGTCAAGGATGCACTCCATGATACCTGGAATTTGCGGAATAATTGCTGGGTTTATCTATAGATGTGATCTGGGCGGAATACAGGAAATAG
                            agttaac  putative branch site (score: 3)
                                        tccttgt  putative PPT
      ttgatattggttaaat  TA-rich tract