1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgggattccttgagcccgacctggttgtgacggagtggttgatgtgtggaggtgtatggtgtgcatagtggatcggtgataagtgaatgcgtgggtgggacttggctcatgttgtctcgggttggcttgtgcagCTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCCCCGGCCGAACGTCCTGCAGCCAGTGCAACGGCATCTCCAGCTCCTGCGACAGCTC
species | Physcomitrella patens |
transcript | PP1S6_129V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGCACTCGTACGCGTCTATT CTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCTCCGGCCEST: gi|162274554|gb|FC450997.1|FC450997
genomic: GAAGCACTCGTACGCGTCTATTgtgagtggga ... gcttgtgcagCTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCCCCGGCC
EST: AGGCCGAGAGTGGTGGGGAGGCACCCAAGAAGCACTCGTACGCGTCTATT CTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCCCCGGCCEST: gi|162274553|gb|FC450996.1|FC450996
genomic: AGGCCGAGAGTGGTGGGGAGGCACCCAAGAAGCACTCGTACGCGTCTATTgtgagtggga ... gcttgtgcagCTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCCCCGGCC
EST: AGGCCGAGAGTGGTGGGGAGGCACCCAAGAAGCACTCGTACGCGTCTATT CTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCCCCGGCC
genomic: AGGCCGAGAGTGGTGGGGAGGCACCCAAGAAGCACTCGTACGCGTCTATTgtgagtggga ... gcttgtgcagCTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCCCCGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgggattccttgagcccgacctggttgtgacggagtggttgatgtgtggaggtgtatggtgtgcatagtggatcggtgataagtgaatgcgtgggtgggacttggctcatgttgtctcgggttggcttgtgcagCTGAGGGTTATCGGAACACCGCCTCCGAAGGCTACGCCTCAGGCCCCGGCCGAACGTCCTGCAGCCAGTGCAACGGCATCTCCAGCTCCTGCGACAGCTC
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