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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaagtcctacagcaaaatgttccagtactttgtgcattgtgatgaattcttttgattgttctgctgagtattctattgttcatgtggctgtatcttagGTGAGTGCAACCATAAAGAAAGAGTTGGGTAAGGACCCTTCAGAGATTTTTGCTCGCTTCGATACTACTGCACTTGCAACAGCTTCG

Basic information

species Physcomitrella patens
transcript PP1S93_33V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575051|gb|BJ947875.1|BJ947875
EST:     AAGTTCTCCGTCAGCTTCAGGATTCCCTTCCTCCACGTCCTATTAAGGAG                         GTGAGTGCAACCATAAAGAAAGAGTTGGGTAAGGACCCTTCAGAGATTTTT
genomic: AAGTTCTCCGTCAGCTTCAGGATTCCCTTCCTCCACGTCCTATTAAGGAGgttcgtaaag ... tgtatcttagGTGAGTGCAACCATAAAGAAAGAGTTGGGTAAGGACCCTTCAGAGATTTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattcttttgattgttctgctgagtattctattgttcatgtggctgtatcttagGTGAGTGCAACCATAAAGAAAGAGTTGGGTAAGGACCCTTCAGAGATTTTTGCTCGCTTCGATACTACTGCACTTGCAACAGCTTCG
      ttttgat  putative branch site (score: 4)
                         tattctatt  TA-rich tract