1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtgaccttttatgttgagttggacacacaccatgcaaataactattttgttttggagaattcaagaattttttattgtcgaacttgctcctttgatttaggaactaaattaagaatgtggtttttctgtttgttaagACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCATACATATCCCACAAGCAAGAAGTATTATTAACTGCAGAAAGTGTATACG
species | Physcomitrella patens |
transcript | PP1S93_148V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTG ACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCAEST: gi|162180968|gb|FC358622.1|FC358622
genomic: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTGgtaagtgacc ... gtttgttaagACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCA
EST: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTG ACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCAEST: gi|162270471|gb|FC447587.1|FC447587
genomic: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTGgtaagtgacc ... gtttgttaagACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCA
EST: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTG ACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCAEST: gi|162198477|gb|FC375312.1|FC375312
genomic: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTGgtaagtgacc ... gtttgttaagACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCA
EST: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTG ACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCA
genomic: GGCGGATTAAATCTCTGAAAACTTCTAATGGGAATTCCGCTCGAGCAGTGgtaagtgacc ... gtttgttaagACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCA
cttgctcctttgatttaggaactaaattaagaatgtggtttttctgtttgttaagACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCATACATATCCCACAAGCAAGAAGTATTATTAACTGCAGAAAGTGTATACG
aactaaa putative branch site (score: 2)
tttttctgtttgtt putative PPT
aactaaattaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaccttttatgttgagttggacacacaccatgcaaataactattttgttttggagaattcaagaattttttattgtcgaacttgctcctttgatttaggaactaaattaagaatgtggtttttctgtttgttaagACATTGGAAGGGGAATCAAGTAGCGAAGAAAGCGAAAGCGAGGAGAAAGCATACATATCCCACAAGCAAGAAGTATTATTAACTGCAGAAAGTGTATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG