1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ataaaaattactatacatatatatatatatatatatatatatatatatatacatatatccgtctgttgcttaccttcgtgcgacttggtggtatccacagATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTAGTTTTTGGTTATATATCTGCCCTCGTCGTAGACATGGCCTTTTTCATTA
species | Physcomitrella patens |
transcript | PP1S425_13V6.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAG ATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTAEST: gi|37829391|gb|BJ587403.1|BJ587403
genomic: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAGgtacagtgct ... gtatccacagATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTA
EST: TGGGTCAGATTGTGGAAGTCAAGTATAATGTTGGATTTAACTATATGGAG ATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTAEST: gi|19777603|gb|BQ039203.1|BQ039203
genomic: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAGgtacagtgct ... gtatccacagATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTA
EST: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAG ATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTAEST: gi|37845266|gb|BJ603274.1|BJ603274
genomic: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAGgtacagtgct ... gtatccacagATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTA
EST: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAG ATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTAEST: gi|67692290|gb|BJ952523.1|BJ952523
genomic: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAGgtacagtgct ... gtatccacagATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTA
EST: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAG ATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTA
genomic: TGGGTCAGATTGTGGAAGTCAAGTATCATGTTGGATTTAACTATATGGAGgtacagtgct ... gtatccacagATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTA
tatatacatatatccgtctgttgcttaccttcgtgcgacttggtggtatccacagATAGACCTAAATCTTGGATCCTCAGGGGTGGTCCGAGGAGTTCTGAGCTTAGTTTTTGGTTATATATCTGCCCTCGTCGTAGACATGGCCTTTTTCATTA
tgcttac putative branch site (score: 3)
acatatat TA-rich tract