1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttgactagcattttcgtttttagtgactcacattgatagtaatgctactccttcataactgcgtttgtattgaacatcctttgtctgcattccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCCCGTCTTTCACAAGAAG
species | Physcomitrella patens |
transcript | PP1S6_198V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|7582814|gb|AW699031.1|AW699031
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162248096|gb|FC420101.1|FC420101
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|18369053|gb|BJ201138.1|BJ201138
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGANGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|7147838|gb|AW509760.1|AW509760
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162250013|gb|FC427114.1|FC427114
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162209881|gb|FC386023.1|FC386023
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|37847272|gb|BJ605280.1|BJ605280
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162202561|gb|FC379244.1|FC379244
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162245704|gb|FC419604.1|FC419604
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|15729018|gb|BI741095.1|BI741095
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|18327147|gb|BJ159148.1|BJ159148
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACGAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|18369077|gb|BJ201162.1|BJ201162
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162253005|gb|FC429066.1|FC429066
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|18366870|gb|BJ198950.1|BJ198950
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162202562|gb|FC379245.1|FC379245
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162213753|gb|FC390368.1|FC390368
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|15327299|gb|BI487887.1|BI487887
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162253004|gb|FC429065.1|FC429065
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|18335425|gb|BJ167444.1|BJ167444
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACGAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162203006|gb|FC380078.1|FC380078
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|67572978|gb|BJ945802.1|BJ945802
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162245986|gb|FC421875.1|FC421875
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162209880|gb|FC386022.1|FC386022
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162211965|gb|FC388045.1|FC388045
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|7047264|gb|AW477158.1|AW477158
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|67703412|gb|BJ963645.1|BJ963645
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|6102360|gb|AW126830.1|AW126830
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: CACAAGGTGACGCAGGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGEST: gi|67723922|gb|BJ974181.1|BJ974181
genomic: CACAAGGTGACGCAG-TACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATG
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|15320178|gb|BI487827.1|BI487827
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: CAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162213754|gb|FC390369.1|FC390369
genomic: CAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162249941|gb|FC427042.1|FC427042
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: AAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|37850368|gb|BJ608376.1|BJ608376
genomic: AAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|67696359|gb|BJ956592.1|BJ956592
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCEST: gi|162203414|gb|FC378822.1|FC378822
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
EST: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAG GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGGAAGGACAGCTTGTACGCCCAAGgtatccactt ... attccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGC
gctactccttcataactgcgtttgtattgaacatcctttgtctgcattccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCCCGTCTTTCACAAGAAG
tcataac putative branch site (score: 91)
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgactagcattttcgtttttagtgactcacattgatagtaatgctactccttcataactgcgtttgtattgaacatcctttgtctgcattccggcagGAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCCCGTCTTTCACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG