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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaaaatatctttcgtcttcacatgtgttccttgacatcggcgattaaatgcattcttcttgacaaggcaacgaatctcgaaaacttggtgttgcacagGTGTGCAGAAGGAAAGGATGTTGCCCGTAGACATGTATGTGCTTAGTTCAGATGGCACTGTACTGTCAGCACCTCCTGCTAAGGGTGCACCACACAAACC

Basic information

species Physcomitrella patens
transcript PP1S1_661V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100401754|gb|BY954691.1|BY954691
EST:     TGAGTCCGATGTCGATGTGCAGGAGCGACTTATTGTCATGGCGCCCTCTG                         GTGTGCAGAAGGAAAG-ATGTTGCCCGTAGACATGTATGTGCTTAGTTCAG
genomic: TGAGTCCGATGTCGATGTGCAGGAGCGACTTATTGTCATGGCGCCCTCTGgtgagatagc ... tgttgcacagGTGTGCAGAAGGAAAGGATGTTGCCCGTAGACATGTATGTGCTTAGTTCAG
EST: gi|100375304|gb|BY948832.1|BY948832
EST:     TGAGTCCGATGTCGATGTGCAGGAGCGACTTATTGTCATGGCGCCCTCTG                         GTGTGCAGAAGGAAAGGATGTTGCCCGTAGACATGTATGTGCTTAGTTCAG
genomic: TGAGTCCGATGTCGATGTGCAGGAGCGACTTATTGTCATGGCGCCCTCTGgtgagatagc ... tgttgcacagGTGTGCAGAAGGAAAGGATGTTGCCCGTAGACATGTATGTGCTTAGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatgcattcttcttgacaaggcaacgaatctcgaaaacttggtgttgcacagGTGTGCAGAAGGAAAGGATGTTGCCCGTAGACATGTATGTGCTTAGTTCAGATGGCACTGTACTGTCAGCACCTCCTGCTAAGGGTGCACCACACAAACC
             tcttgac  putative branch site (score: 3)
                                    aaaactt  TA-rich tract