1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcatctaccatcaatcttgttagtttctttcccattcttctgtactacttacaatctacatctttctcagtttctgagtctcatgtgatcactttctacttgcagGGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCATCCTTCTTTGCGTGGGAGTTTTGAACTGGAACGATTGCCTCCAGGAGAAA
species | Physcomitrella patens |
transcript | PP1S163_57V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGG GGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCATEST: gi|162264832|gb|FC440607.1|FC440607
genomic: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGGgtacgcatct ... ctacttgcagGGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCAT
EST: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGG GGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCATEST: gi|67573558|gb|BJ946382.1|BJ946382
genomic: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGGgtacgcatct ... ctacttgcagGGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCAT
EST: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGG GGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCATEST: gi|162261264|gb|FC437281.1|FC437281
genomic: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGGgtacgcatct ... ctacttgcagGGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCAT
EST: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGG GGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCAT
genomic: TGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGGgtacgcatct ... ctacttgcagGGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCAT
acaatctacatctttctcagtttctgagtctcatgtgatcactttctacttgcagGGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCATCCTTCTTTGCGTGGGAGTTTTGAACTGGAACGATTGCCTCCAGGAGAAA
tacttac putative branch site (score: 10)
ctttctactt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcatctaccatcaatcttgttagtttctttcccattcttctgtactacttacaatctacatctttctcagtttctgagtctcatgtgatcactttctacttgcagGGAAACCCTCGGTATTGCGAGTGTGGTTGCCGCAATGCTGGGACTCTGCATCCTTCTTTGCGTGGGAGTTTTGAACTGGAACGATTGCCTCCAGGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA