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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtgcagttttttatgagatcttattttttttgtgaatcttgttcgttaatgagctttaatgatcatgaggtgcttagcattcttcgccttgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAACAGTCACAAACACGTGCATCAGGTTCGGGTTTGTCAACTGAAATGAATAA

Basic information

species Physcomitrella patens
transcript PP1S9_103V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362322|gb|DC954568.1|DC954568
EST:     ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAG                         TTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
genomic: ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAGgtgtatttcc ... tgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
EST: gi|208364988|gb|DC947130.1|DC947130
EST:     ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAG                         TTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
genomic: ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAGgtgtatttcc ... tgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
EST: gi|208371603|gb|DC952245.1|DC952245
EST:     ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAG                         TTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
genomic: ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAGgtgtatttcc ... tgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
EST: gi|208364115|gb|DC950407.1|DC950407
EST:     ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAG                         TTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
genomic: ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAGgtgtatttcc ... tgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
EST: gi|208366030|gb|DC951125.1|DC951125
EST:     ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAG                         TTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
genomic: ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAGgtgtatttcc ... tgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
EST: gi|37839956|gb|BJ597964.1|BJ597964
EST:     ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAG                         TTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
genomic: ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAGgtgtatttcc ... tgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
EST: gi|37840531|gb|BJ598539.1|BJ598539
EST:     ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAG                         TTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC
genomic: ATGATCTTGATGATGCAGCAAAGAAGGCAGTTAAAGCTTTGAAGCAATAGgtgtatttcc ... tgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgagctttaatgatcatgaggtgcttagcattcttcgccttgtttttcagTTACTTTGGAGCTCTTGTTGTCACCTGCCTGCACCTTACACTACATTCAACAGTCACAAACACGTGCATCAGGTTCGGGTTTGTCAACTGAAATGAATAA
         ctttaat  putative branch site (score: 4)
                                   ttcttcgccttgtttt  putative PPT
          tttaatgat  TA-rich tract