1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttcatttccatatcctccgataattcaactccgtgatccttgtcgcattttctgcgatgcaaaagtagaaaatacattgaattccaacttctctttgttatttggtccaacgggttcgacatcccctttttcgttcatcacattaacgtcaacccgttttgctgtttcagGTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAGATCATGGCTTCCGGACAGCCAAGTCTCTCCTTGAACTGTGAGATAAGAT
species | Physcomitrella patens |
transcript | PP1S1_661V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAG GTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAGEST: gi|208371941|gb|DC948344.1|DC948344
genomic: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAGgttcatttcc ... gctgtttcagGTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAG
EST: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAG GTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAGEST: gi|37845748|gb|BJ603756.1|BJ603756
genomic: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAGgttcatttcc ... gctgtttcagGTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAG
EST: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAG GTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAGEST: gi|162173772|gb|FC349948.1|FC349948
genomic: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAGgttcatttcc ... gctgtttcagGTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAG
EST: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAG GTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAGEST: gi|208396876|gb|DC920444.1|DC920444
genomic: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAGgttcatttcc ... gctgtttcagGTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAG
EST: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAG GTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAG
genomic: AACATTTGCTACCGATGTGCTTGCTGAAGCCGTTGCTGCCAAGGAAGCAGgttcatttcc ... gctgtttcagGTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAG
tcgacatcccctttttcgttcatcacattaacgtcaacccgttttgctgtttcagGTCTGCAAGCGGTACTCTTGCTGCGTCCTGGAAATGCGCCATTGCCTTCAGATCATGGCTTCCGGACAGCCAAGTCTCTCCTTGAACTGTGAGATAAGAT
cattaac putative branch site (score: 2)
ttttgct putative PPT
acattaa TA-rich tract