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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactggtgatggatttccatgctggtttttaggacttttcgacagctcttgcattcctgggctcactgcatgtgaaactgactcctcttgaccgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG

Basic information

species Physcomitrella patens
transcript PP1S100_198V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18326001|gb|BJ158000.1|BJ158000
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18361423|gb|BJ193489.1|BJ193489
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18325506|gb|BJ157503.1|BJ157503
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18330350|gb|BJ162356.1|BJ162356
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18325613|gb|BJ157610.1|BJ157610
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18332063|gb|BJ164075.1|BJ164075
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18329694|gb|BJ161700.1|BJ161700
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18330259|gb|BJ162265.1|BJ162265
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18328969|gb|BJ160975.1|BJ160975
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18374420|gb|BJ205998.1|BJ205998
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18329368|gb|BJ161374.1|BJ161374
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18347749|gb|BJ179796.1|BJ179796
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18351974|gb|BJ184026.1|BJ184026
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18344180|gb|BJ176219.1|BJ176219
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18332289|gb|BJ164302.1|BJ164302
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18359780|gb|BJ191841.1|BJ191841
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18355771|gb|BJ187830.1|BJ187830
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18325798|gb|BJ157795.1|BJ157795
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18328115|gb|BJ160119.1|BJ160119
EST:     CTTTGGGCATTTGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18369497|gb|BJ201584.1|BJ201584
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18367200|gb|BJ199281.1|BJ199281
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18358412|gb|BJ190471.1|BJ190471
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18351328|gb|BJ183380.1|BJ183380
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18326157|gb|BJ158156.1|BJ158156
EST:     TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCANG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
genomic: TTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCA-Ggtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGT
EST: gi|18367452|gb|BJ199535.1|BJ199535
EST:     TTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: TTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18349364|gb|BJ181413.1|BJ181413
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18353077|gb|BJ185132.1|BJ185132
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18330492|gb|BJ162498.1|BJ162498
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
EST: gi|18328497|gb|BJ160502.1|BJ160502
EST:     CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAG                         ATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG
genomic: CTTTGGGCATTGGAAGATTGTTCTGAAAGTCAACCTTCAGGAGGTATCAGgtgtgttgca ... accgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgcattcctgggctcactgcatgtgaaactgactcctcttgaccgtctcagATTGGTGGGTTCAAAATGGCGGCTGCACTACCGGAGTACCTCTGGTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG
                                              ccgtctc  CT-rich tract