1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atgctgcagagggtagcacttgtgttcattgaagcatttgataaatgatatcaaaacctcttcataatttgactcttgccctgtcccatcattttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCA
species | Oryza sativa |
transcript | LOC_Os12g44310.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAG GAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAEST: gi|12622289|gb|AU172502.1|AU172502
genomic: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGgtaagtggtg ... attttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
EST: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAG GAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAEST: gi|66914981|gb|CX101829.1|CX101829
genomic: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGgtaagtggtg ... attttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
EST: CAGAGAATTATTCTATTTTCATGGACCTTACTCTGTTGTTCCGACCAAAG GAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAEST: gi|29644980|gb|CB649987.1|CB649987
genomic: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGgtaagtggtg ... attttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
EST: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAG GAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAEST: gi|58687308|gb|CK075995.1|CK075995
genomic: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGgtaagtggtg ... attttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
EST: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAG GAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAEST: gi|58612392|gb|CK040104.1|CK040104
genomic: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGgtaagtggtg ... attttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
EST: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAG GAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
genomic: CAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGgtaagtggtg ... attttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
tgatatcaaaacctcttcataatttgactcttgccctgtcccatcattttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCA
atttgac putative branch site (score: 97)
tcatttt putative PPT
atcattttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctgcagagggtagcacttgtgttcattgaagcatttgataaatgatatcaaaacctcttcataatttgactcttgccctgtcccatcattttataagGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-tgctgca
- - - - - - - -gcacttg
- - - - - - - - - - - - - - -tgaagca
- - - - - - - - - - - - - - - - - - - - - - - - -atcaaaa