1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaaatccacagtacatactaactttgctttcgctgttttcattcattacattagcctattagtttctcctctctgctactgattttggcatatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGATTGAAGAGGTGGAGGCTAAAGCCTAAATACTCTAGTGATTCATCGCTCCT
species | Oryza sativa |
transcript | LOC_Os03g40260.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAG GGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGATEST: gi|58678649|gb|CK067336.1|CK067336
genomic: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAGgtatgtacac ... atatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGAT
EST: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAG GGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGATEST: gi|38471595|gb|CF955726.1|CF955726
genomic: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAGgtatgtacac ... atatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGAT
EST: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAG GGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGATEST: gi|58678056|gb|CK066743.1|CK066743
genomic: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAGgtatgtacac ... atatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGAT
EST: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAG GGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGATEST: gi|86852804|gb|CI323113.1|CI323113
genomic: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAGgtatgtacac ... atatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGAT
EST: GCATCCCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAG GGAGCATTTGGTTGAGCAAGGAGAGTGTGAGGCTGTTGGAAAATCAAATGAEST: gi|218494375|gb|FG951478.1|FG951478
genomic: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAGgtatgtacac ... atatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAG-CTGTTGGAAAATCAAATGA
EST: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAG GGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGAT
genomic: GCATCGCGGACTGGTGGTGATGCCTTGGCACGTCTGTGTGAGAAATTGAGgtatgtacac ... atatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGAT
attacattagcctattagtttctcctctctgctactgattttggcatatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGATTGAAGAGGTGGAGGCTAAAGCCTAAATACTCTAGTGATTCATCGCTCCT
tactgat putative branch site (score: 11)
tattagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaatccacagtacatactaactttgctttcgctgttttcattcattacattagcctattagtttctcctctctgctactgattttggcatatttacagGGAGCATTTGGTTGAGCAAGGAGAGTGTGAGCTGTTGGAAAATCAAATGATTGAAGAGGTGGAGGCTAAAGCCTAAATACTCTAGTGATTCATCGCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - cattcat