1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttattcattaaaatatttaatttatctccgtaattgaataaataatccaacaattcgtttaataatctgtttaatttactgacatattgttgttctcagTGCTTCTTTCCTGCTGAGCTTGTTAAGAGCATCACCGCTCCCACGCTTATTCTGAACTCTGCTTATGATTCTTGGCAG
species | Oryza sativa |
transcript | LOC_Os01g66850.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACACAGGTTTTGTCAAAGGACTGTCTTGCAAAGAAGGATCCAACAGAG TGCTTCTTTCCTGCTGAGCTTGTTAAGAGCATCACCGCTCCCACGCTTATTEST: gi|27554537|gb|CA998437.1|CA998437
genomic: TTACACAGGTTTTGTCAAAGGACTGTCTTGCAAAGAAGGATCCAACAGAGgtatatacct ... ttgttctcagTGCTTCTTTCCTGCTGAGCTTGTTAAGAGCATCACCGCTCCCACGCTTATT
EST: TTACACAGGTTTTGTCAAAGGACTGTCTTGCAAAGAAGGATCCAACAGAG TGCTTCTTTCCTGCTGAGCTTGTTAAGAGCATCACCGCTCCCACGCTTATT
genomic: TTACACAGGTTTTGTCAAAGGACTGTCTTGCAAAGAAGGATCCAACAGAGgtatatacct ... ttgttctcagTGCTTCTTTCCTGCTGAGCTTGTTAAGAGCATCACCGCTCCCACGCTTATT
atccaacaattcgtttaataatctgtttaatttactgacatattgttgttctcagTGCTTCTTTCCTGCTGAGCTTGTTAAGAGCATCACCGCTCCCACGCTTATTCTGAACTCTGCTTATGATTCTTGGCAG
tactgac putative branch site (score: 32)
ttgttctc putative PPT
aattcgtttaataatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattcattaaaatatttaatttatctccgtaattgaataaataatccaacaattcgtttaataatctgtttaatttactgacatattgttgttctcagTGCTTCTTTCCTGCTGAGCTTGTTAAGAGCATCACCGCTCCCACGCTTATTCTGAACTCTGCTTATGATTCTTGGCAG
- - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - aatccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactga