1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtgtgcatctaatatatatttatcatgtccttgcatggttttctctcctttttttaccgtgaacatagctattctgttaatattgttatcttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGCAAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCG
species | Oryza sativa |
transcript | LOC_Os06g49430.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAG TGGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAEST: gi|88406114|gb|CI593894.1|CI593894
genomic: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAGgtggagtctt ... cttactgcagTGGGG-TTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACA
EST: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAG TGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGEST: gi|58663177|gb|CK051863.1|CK051863
genomic: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAGgtggagtctt ... cttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAG
EST: CTGCAAGAGTATCTGACAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAG TGGGGTTGATCGCTTCAAAEST: gi|89195898|gb|CI007317.1|CI007317
genomic: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAGgtggagtctt ... cttactgcagTGGGGTTGATCGCTTCAAA
EST: AGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAG TGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGEST: gi|218481672|gb|FG962985.1|FG962985
genomic: AGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAGgtggagtctt ... cttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAG
EST: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAG TGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGEST: gi|218490968|gb|FG950249.1|FG950249
genomic: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAGgtggagtctt ... cttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAG
EST: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAG TGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGEST: gi|86829561|gb|CI286751.1|CI286751
genomic: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAGgtggagtctt ... cttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAG
EST: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAG TGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAG
genomic: CTGCAAGAGTATATGAAAGGTGGAGAGCAGATTAGCTTCCTCTATCCAAGgtggagtctt ... cttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAG
ctcctttttttaccgtgaacatagctattctgttaatattgttatcttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGCAAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCG
atcttac putative branch site (score: 24)
ttatctt CT-rich tract
ttaatattgttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgcatctaatatatatttatcatgtccttgcatggttttctctcctttttttaccgtgaacatagctattctgttaatattgttatcttactgcagTGGGGTTGATCGCTTCAAACGACAGTTTGCACACCTTGAGGAGAACTACAGCAAAGGAGAAAGAGGTTCTCCACTGCAGAGGAAGCATGCTTCTTTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- -gtgcatc
- - - - - - - - - - - - catgtcc
- - - - - - - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt