1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agatggtgaaagtattttttttccctttgtcatggaatctcggtacagatgcgattagcaagacgtagtttacatctaaatgtttggtttgcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTGCCGTGGACGAGGCACAATTTCCAGATTGTCATGAGCTTTTGGATGATT
species | Oryza sativa |
transcript | LOC_Os01g56360.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|29633484|gb|CB638493.1|CB638493
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCTTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|58690336|gb|CK079023.1|CK079023
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|58608842|gb|CK036875.1|CK036875
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAEST: gi|88519370|gb|CI447024.1|CI447024
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAA
EST: TGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|29680740|gb|CB677015.1|CB677015
genomic: TGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|88478973|gb|CI416244.1|CI416244
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: TCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|29678634|gb|CB674909.1|CB674909
genomic: TCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|29664303|gb|CB660578.1|CB660578
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTEST: gi|38468635|gb|CF952766.1|CF952766
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
EST: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAA GCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
genomic: GTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAgtaagttccc ... gcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTT
cagatgcgattagcaagacgtagtttacatctaaatgtttggtttgcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTGCCGTGGACGAGGCACAATTTCCAGATTGTCATGAGCTTTTGGATGATT
atctaaa putative branch site (score: 3)
tttgctt putative PPT
taaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatggtgaaagtattttttttccctttgtcatggaatctcggtacagatgcgattagcaagacgtagtttacatctaaatgtttggtttgcttgtgcagGCCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTGCCGTGGACGAGGCACAATTTCCAGATTGTCATGAGCTTTTGGATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
-gatggtg
- - - - - - - - - - - - - -tgtcatg
- - - - - - - - - - - - - - - - - - - - - - -cagatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttg