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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgattttgtagcacctggcttaaatttacactgcattaaagtaacatactgcgtgcacagtatagtactttttttagcacctaaccatgaaacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTTTCTTGGTTTACTCGGAGACAGCAGCGCAATATTCTTAAGGTTTGCCGCT

Basic information

species Oryza sativa
transcript LOC_Os01g46590.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29616591|gb|CB621603.1|CB621603
EST:     GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA                         GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: gi|29616522|gb|CB621534.1|CB621534
EST:     GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA                         GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: gi|88224185|gb|CI224034.1|CI224034
EST:     GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA                         GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: gi|88843413|gb|CI372313.1|CI372313
EST:     GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA                         GTGTACTTTCTTGACGGGGAAGCGATTTTGGAAACTATGTTAAGCTACTTT
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: gi|58690016|gb|CK078703.1|CK078703
EST:     GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCA                         GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
EST: gi|25804323|gb|CA760284.1|CA760284
EST:     GTTGTTTATTTCGTGTGTTTGCAGCATTGGCTGTAGTCAATTGCTTACCA                         GTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT
genomic: GTTGTTTATTTCGTGTGTCTGCAGCATTGGCTGTAGTCAATTGCTTACCAgtatgttctc ... aacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactgcgtgcacagtatagtactttttttagcacctaaccatgaaacgctgcagGTGTACTTTCTTGACGGGGAAGCGATTTTGGAGACTATGTTAAGCTACTTTTCTTGGTTTACTCGGAGACAGCAGCGCAATATTCTTAAGGTTTGCCGCT
                                 acctaac  putative branch site (score: 2)
               tatagtacttttttta  TA-rich tract