1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttctgcctaccatttacaaattgcagaccacaacagttagctgtaatttagttacattcatggtattgtatctttttactgatgcatctatgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAG
species | Oryza sativa |
transcript | LOC_Os03g02756.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTAAGGCCTCCCCTGTCATCAATATCAGTGAGGATATTTATGCAG GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATGTTCEST: gi|300216075|gb|HO088701.1|HO088701
genomic: GTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAGgtagggctag ... tgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTC
EST: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAG GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATGTTCEST: gi|88399969|gb|CI588273.1|CI588273
genomic: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAGgtagggctag ... tgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTC
EST: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAG GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCEST: gi|33679231|gb|CF307470.1|CF307470
genomic: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAGgtagggctag ... tgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTC
EST: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAG GGTTCAACTCAACTCTGCGCTTANGGAACATAACTCATCATGAATATATTCEST: gi|29675246|gb|CB671521.1|CB671521
genomic: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAGgtagggctag ... tgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTC
EST: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAG GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTC
genomic: AATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAGgtagggctag ... tgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTC
atttagttacattcatggtattgtatctttttactgatgcatctatgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAG
tactgat putative branch site (score: 59)
tattgtatcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgcctaccatttacaaattgcagaccacaacagttagctgtaatttagttacattcatggtattgtatctttttactgatgcatctatgaactccagGGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAG
ttctgcc
- - - - - - - - - aattgca
- - - - - - - - - - - - - - cacaaca
- - - - - - - - - - - - - - - - - - - agctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcatc