1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatttgttcatcttaattagcttaaatttatttactatttatccttcctgaacattgcaaccatgagtctcttttttttggcttgaaatttgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGATGTCAGCAAAGGACAT
species | Oryza sativa |
transcript | LOC_Os01g21180.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCTCCAGGTGGTTCCTTGGATTTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATT-GATATACAAAGEST: gi|33688443|gb|CF316682.1|CF316682
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: ATCTCCAGGTGGTTCCTTGGATGGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGEST: gi|29289887|gb|CB483501.1|CB483501
genomic: ATCTCCAGGTGGTTCCTTGGATG-TTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCAAGCATTGGC-ATTGGATATACAAAGEST: gi|88835943|gb|CI371048.1|CI371048
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: TGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGCCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|33812764|gb|CF332270.1|CF332270
genomic: TGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGEST: gi|29687412|gb|CB683687.1|CB683687
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|33682858|gb|CF311097.1|CF311097
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTAATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAEST: gi|88473032|gb|CI410303.1|CI410303
genomic: CAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCT-ATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAA
EST: GAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88531796|gb|CI460307.1|CI460307
genomic: GAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: ATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|218488231|gb|FG951457.1|FG951457
genomic: ATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88852472|gb|CI374240.1|CI374240
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: TTGAGGAGGAAACACCAGTG GCTATAAT-GCTGAA-GCAAACAGCATGCATT-GCAATTGGATATACAAAGEST: gi|86522655|gb|CI162861.1|CI162861
genomic: TTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: ATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACNCAGTG GCTATAATGGCTGAANGGCAAACAGCATGCATTGGCAATTGGATATACAAEST: gi|88514235|gb|CI441741.1|CI441741
genomic: ATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACAC-CAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAA-GGCAAACAGCATGCATTGGCAATTGGATATACAA
EST: AGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|58030638|gb|CX728181.1|CX728181
genomic: AGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88508109|gb|CI435615.1|CI435615
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|55412623|gb|CV724999.1|CV724999
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|88549468|gb|CI479359.1|CI479359
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: TGAANTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGEST: gi|33665495|gb|CF296462.1|CF296462
genomic: TGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAGCAGCATGCATTGGCAATTGGATATACAAAGEST: gi|66917257|gb|CX104105.1|CX104105
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCCATTGGATATACAAAGEST: gi|88484301|gb|CI421572.1|CI421572
genomic: CATCTCCAGGTGGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
EST: GGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTG GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
genomic: GGTTCCTTGGATGTTGAAGTTGAGGAGGAAACACCAGTGgtaaaagact ... tgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAG
tcctgaacattgcaaccatgagtctcttttttttggcttgaaatttgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGATGTCAGCAAAGGACAT
tttgttt CT-rich tract
ttgaaatttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgttcatcttaattagcttaaatttatttactatttatccttcctgaacattgcaaccatgagtctcttttttttggcttgaaatttgtttatcagGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGATGTCAGCAAAGGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG