1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtttactttataccgattctcatatatccttgaacctcctattcagtaacattcaagaagatccaattctctaataagatgaaacaatcaccttactgttttctgcgtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATGCTGTCCCCTTCTCTCAGAAGTTCCGCAATACTGACCCCTTGGCTCTTC
species | Oryza sativa |
transcript | LOC_Os06g49430.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGEST: gi|58652759|gb|CK041439.1|CK041439
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAG
EST: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGEST: gi|33381883|gb|CF197226.1|CF197226
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCG
EST: TTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATEST: gi|58663889|gb|CK052575.1|CK052575
genomic: TTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGACGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATEST: gi|58693904|gb|CK082591.1|CK082591
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATEST: gi|58663177|gb|CK051863.1|CK051863
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATEST: gi|58668308|gb|CK056994.1|CK056994
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGAAGGCCAEST: gi|58589575|gb|CF987883.1|CF987883
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCA
EST: TATTATAACAGATCTTCTTGGAACTCCATCGATCAGAAACCTTATCCAGG ATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATEST: gi|58661035|gb|CK049715.1|CK049715
genomic: TATTATAACAGATCTTCTTGGAACTCCATC-ATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
EST: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGG ATTCGAAATGAGAAGGGCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
genomic: ATATTATAACAGATCTTCTTGGAACTCCATCATCAGAAACCTTATCCAGGgtatgtttac ... gtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACAT
tccaattctctaataagatgaaacaatcaccttactgttttctgcgtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATGCTGTCCCCTTCTCTCAGAAGTTCCGCAATACTGACCCCTTGGCTCTTC
accttac putative branch site (score: 30)
ttttctgcgtctct putative PPT
taataagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttactttataccgattctcatatatccttgaacctcctattcagtaacattcaagaagatccaattctctaataagatgaaacaatcaccttactgttttctgcgtctctgcagATTCGAAATGAGAAGGCCAGGAGATACTTGAGCACCATGCGGAAAAAACATGCTGTCCCCTTCTCTCAGAAGTTCCGCAATACTGACCCCTTGGCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT