1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttgtagagaaacaatatactgtgaactcttttgtgcaatgctgatgctctagcgttccatgtgttttatgtgttctaacaatagccaatttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTCTCACTGGGAGACCACTATTTCCTGGGAAGAATGTTGTGCACCAATTAG
species | Oryza sativa |
transcript | LOC_Os06g49430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTEST: gi|29664602|gb|CB660877.1|CB660877
genomic: AACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTT-CTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|33795692|gb|CF323716.1|CF323716
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAA- TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58687543|gb|CK076230.1|CK076230
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58652759|gb|CK041439.1|CK041439
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58663889|gb|CK052575.1|CK052575
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58693904|gb|CK082591.1|CK082591
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58663177|gb|CK051863.1|CK051863
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58668308|gb|CK056994.1|CK056994
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|66913253|gb|CX100101.1|CX100101
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTACAAA TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58661035|gb|CK049715.1|CK049715
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATCTGGAGTATTGGGTGCATATTTGCTGAGCTTEST: gi|29627483|gb|CB632494.1|CB632494
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAA- TACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTEST: gi|58668784|gb|CK057470.1|CK057470
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
EST: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGTATCGGGTGCATATTTGCTGAACTT
genomic: CAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAAgtaaggtctt ... ttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTT
tgctctagcgttccatgtgttttatgtgttctaacaatagccaatttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTCTCACTGGGAGACCACTATTTCCTGGGAAGAATGTTGTGCACCAATTAG
ttctaac putative branch site (score: 1)
tgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtagagaaacaatatactgtgaactcttttgtgcaatgctgatgctctagcgttccatgtgttttatgtgttctaacaatagccaatttgcatacagTACACTCCTGCAATTGATATTTGGAGTATTGGGTGCATATTTGCTGAACTTCTCACTGGGAGACCACTATTTCCTGGGAAGAATGTTGTGCACCAATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA