1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctatttgactatatgtgcattcttggagagtcctctgatatcaactcctattggagtagagctgcatcatagtcttcataccatgtgtttatgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGGAATTCTGCAAATTGTATGGCATGACATTGGAGCCGTTGCTGAACATCT
species | Oryza sativa |
transcript | LOC_Os05g06760.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCCAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|87031181|gb|CI259761.1|CI259761
genomic: GTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: CACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|86496175|gb|CI138808.1|CI138808
genomic: CACAGCAACATTGGTTTTTAGAAGCAGTACAAACT-GTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|38483136|gb|CF966938.1|CF966938
genomic: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: CAGCAACA-TGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|87018975|gb|CI256860.1|CI256860
genomic: CAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: ACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|29626430|gb|CB631441.1|CB631441
genomic: ACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|86478019|gb|CI120652.1|CI120652
genomic: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|572123|gb|D41634.1|D41634
genomic: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: ACAGCAACATTGGTTTTTAGGANNCAGTACAAACTTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCCAGTGGGEST: gi|287145|gb|D15950.1|D15950
genomic: ACAGCAACATTGGTTTTTAGAAG-CAGTACAAACT-GTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATC-AGTGGG
EST: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|58679080|gb|CK067767.1|CK067767
genomic: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: CACAGCAACATTGGTTTTTAGAAGCAGTACAAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGEST: gi|300215580|gb|HO088206.1|HO088206
genomic: CACAGCAACATTGGTTTTTAGAAGCAGTAC-AAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
EST: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAG GTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
genomic: TCACAGCAACATTGGTTTTTAGAAGCAGTACAAACTGTGCTCCTTACAAGgttagcagca ... atgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAG
tcctattggagtagagctgcatcatagtcttcataccatgtgtttatgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGGAATTCTGCAAATTGTATGGCATGACATTGGAGCCGTTGCTGAACATCT
tgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatttgactatatgtgcattcttggagagtcctctgatatcaactcctattggagtagagctgcatcatagtcttcataccatgtgtttatgctcgcagGTCCTGTTTGAGCAAAATCAGTGGGACAGCCTTGTGGACCAGTTTAAGCAGGAATTCTGCAAATTGTATGGCATGACATTGGAGCCGTTGCTGAACATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt