1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttgattcttttccctctattcatttgcattcatcttcagatattccagaaatacgttggactatccaatttacttgatgttttcatactactttgtattgaatctgtacacttttgctccattacaaagctgacagaatttgcctactataaagATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGA
species | Oryza sativa |
transcript | LOC_Os04g52479.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAG ATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGEST: gi|58686413|gb|CK075100.1|CK075100
genomic: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGgttgattctt ... tactataaagATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTG
EST: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAG ATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGEST: gi|218484706|gb|FG949605.1|FG949605
genomic: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGgttgattctt ... tactataaagATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTG
EST: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAG ATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGEST: gi|86437602|gb|CI119324.1|CI119324
genomic: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGgttgattctt ... tactataaagATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTG
EST: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAG ATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGNCCGCCGTTACCTCAGCTG
genomic: ACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGgttgattctt ... tactataaagATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTG
gaatctgtacacttttgctccattacaaagctgacagaatttgcctactataaagATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGA
agctgac putative branch site (score: 3)
tttgcct putative PPT
tactataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgattcttttccctctattcatttgcattcatcttcagatattccagaaatacgttggactatccaatttacttgatgttttcatactactttgtattgaatctgtacacttttgctccattacaaagctgacagaatttgcctactataaagATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA