1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtttgtgctgctaaagctgttactcctttgtttatgtttattgtgcttcaaattgcactatcatctgttttaacaatattgagggatccctttcttttagGTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTGGCTGGTGCAACTCCAGTGATCCTTCCTACAAGCATATCAGAGAATTTCT
species | Oryza sativa |
transcript | LOC_Os01g65090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAATGCATTACGCAAGCCGTACTTGCCGTTTGCTCACCTGGTGATGAG GTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTGEST: gi|29645872|gb|CB650879.1|CB650879
genomic: AGCAATGCATTACGCAAGCCGTACTTGCCGTTTGCTCACCTGGTGATGAGgtttggcctc ... tttcttttagGTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTG
EST: AGCAATGCATTACGCAAGCCGTACTTGCCGTTTGCTCACCTGGTGATGAG GTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTGEST: gi|109974688|gb|DT807048.1|DT807048
genomic: AGCAATGCATTACGCAAGCCGTACTTGCCGTTTGCTCACCTGGTGATGAGgtttggcctc ... tttcttttagGTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTG
EST: TGCCGTTTGCTCACCTGGTGATGAG GTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTG
genomic: TGCCGTTTGCTCACCTGGTGATGAGgtttggcctc ... tttcttttagGTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTG
cttcaaattgcactatcatctgttttaacaatattgagggatccctttcttttagGTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTGGCTGGTGCAACTCCAGTGATCCTTCCTACAAGCATATCAGAGAATTTCT
ttttaac putative branch site (score: 16)
tccctttctttt putative PPT
tgttttaacaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgctgctaaagctgttactcctttgtttatgtttattgtgcttcaaattgcactatcatctgttttaacaatattgagggatccctttcttttagGTTTTGATACCAGCACCATACTGGGTCAGTTATCCTGAGATGGCTACATTGGCTGGTGCAACTCCAGTGATCCTTCCTACAAGCATATCAGAGAATTTCT
- - -tgctgct
- - - - - - - agctgtt
- - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - gtgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata