1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aattgttaaagttttcctggtggagaatatcaactggaatggaagttacgctagttatttgttaatggaaaccatgaatcttgccttttcattggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCTGGATTGACATCTCCAGGTGG
species | Oryza sativa |
transcript | LOC_Os01g21180.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGT ATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTTEST: gi|29289887|gb|CB483501.1|CB483501
genomic: GTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGTgtaattttct ... attggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTG
EST: AATATCCGTGATGGTCCTTACATGCCAACCCTTGCGCCTTCTTCATCAGT ATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTGEST: gi|29687412|gb|CB683687.1|CB683687
genomic: AATATCCGTGATGGTCCTTACATGCCAA-CCTTGCGCCTTCTTCATCAGTgtaattttct ... attggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTG
EST: CAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGT ATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTGEST: gi|88722541|gb|CI746051.1|CI746051
genomic: CAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGTgtaattttct ... attggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTG
EST: CAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGT ATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTGEST: gi|86522655|gb|CI162861.1|CI162861
genomic: CAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGTgtaattttct ... attggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTG
EST: CAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGT ATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTG
genomic: CAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGTgtaattttct ... attggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTG
ttacgctagttatttgttaatggaaaccatgaatcttgccttttcattggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCTGGATTGACATCTCCAGGTGG
tgttaat putative branch site (score: 74)
tcttgccttttcatt putative PPT
tagttatttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgttaaagttttcctggtggagaatatcaactggaatggaagttacgctagttatttgttaatggaaaccatgaatcttgccttttcattggatcagATCCTGACATCATGAAGAAGTTCCAAGTGGATAGAGGCGCTATCAAGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCTGGATTGACATCTCCAGGTGG
- - - - - - - -cctggtg
- - - - - - - - - - - - - - - - - tggaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgaa