1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattgtcctctcccatgtggcaatccccattccgcatagtgctcatcgttttgtgaaattattaaatacatatttgttattcatttatttgtgtgtgtatatatgctcatggaaatatgtcgtgttcctgtgatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGGGTGGCAGCCAGCTGCGCCGCAGCGGCAGCTGCATGTGGTGAAACGGGC
species | Oryza sativa |
transcript | LOC_Os01g64000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|86492277|gb|CI134910.1|CI134910
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGGATGCAAATAGGEST: gi|5701698|gb|AU063505.2|AU063505
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|86497616|gb|CI140249.1|CI140249
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|88964713|gb|CI070059.1|CI070059
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|89189330|gb|CI048869.1|CI048869
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|27548974|gb|CA766860.2|CA766860
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCNAATAGGEST: gi|86601832|gb|CI258508.1|CI258508
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|88481991|gb|CI419262.1|CI419262
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|88841546|gb|CI080802.1|CI080802
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|9457318|gb|AU063339.2|AU063339
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAEST: gi|88842196|gb|CI081452.1|CI081452
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCA
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|8527686|gb|AU092501.1|AU092501
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|8528101|gb|AU092916.1|AU092916
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|86522773|gb|CI162979.1|CI162979
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|8528266|gb|AU093081.1|AU093081
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|86435385|gb|CI106618.1|CI106618
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGEST: gi|87029252|gb|CI276520.1|CI276520
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
EST: AAGACGGTTCTACTGACAAAGAAGCAAATG CTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
genomic: AAGACGGTTCTACTGACAAAGAAGCAAATGgtattgtcct ... gatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGG
atttgtgtgtgtatatatgctcatggaaatatgtcgtgttcctgtgatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGGGTGGCAGCCAGCTGCGCCGCAGCGGCAGCTGCATGTGGTGAAACGGGC
tttttc CT-rich tract
tgtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtcctctcccatgtggcaatccccattccgcatagtgctcatcgttttgtgaaattattaaatacatatttgttattcatttatttgtgtgtgtatatatgctcatggaaatatgtcgtgttcctgtgatttttcagCTGGTTGAGAAAATGATGGAGCAGTCCAAGGAGAAGATGAATGCAAATAGGGGTGGCAGCCAGCTGCGCCGCAGCGGCAGCTGCATGTGGTGAAACGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC