1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gcatgttgttattcctttctagcctttagttcatgccttttctcatcagaaactttattggctttgatggaattggttcttattctaaatcaagttcactgccattttctgaattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCATGCACTCTTGTAATGGATTTGGAAGGCACGGATGGTCGAGAGAGGGGA
species | Oryza sativa |
transcript | LOC_Os01g39310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAG GTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCEST: gi|29675672|gb|CB671947.1|CB671947
genomic: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGgcatgttgtt ... aattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACC
EST: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAG GTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCEST: gi|66925214|gb|CX112062.1|CX112062
genomic: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGgcatgttgtt ... aattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACC
EST: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAG GTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCEST: gi|29671821|gb|CB668096.1|CB668096
genomic: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGgcatgttgtt ... aattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACC
EST: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAG GTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCEST: gi|29664221|gb|CB660496.1|CB660496
genomic: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGgcatgttgtt ... aattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACC
EST: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAG GTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCEST: gi|29632288|gb|CB637297.1|CB637297
genomic: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGgcatgttgtt ... aattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACC
EST: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAG GTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACC
genomic: AATCACCTTTTCCGCACCAATTTCAGGGAAATGGATGCCTTCAAAGGAAGgcatgttgtt ... aattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACC
atggaattggttcttattctaaatcaagttcactgccattttctgaattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCATGCACTCTTGTAATGGATTTGGAAGGCACGGATGGTCGAGAGAGGGGA
ttctaaa putative branch site (score: 2)
ttcttc putative PPT
ttcttattctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgttgttattcctttctagcctttagttcatgccttttctcatcagaaactttattggctttgatggaattggttcttattctaaatcaagttcactgccattttctgaattcttcagGTCACAGACTACCAAAGGTATATGGATGGCGAAGGCCCATAATATTGAACCATGCACTCTTGTAATGGATTTGGAAGGCACGGATGGTCGAGAGAGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG