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...aaaacacaaaatacatatcctcatacctgttggcctgttgcttccaatatctgtgcataacgtgtttaattgatttcatattctctgtttgtttccacagGTTTGATGGAGATGG
species | Oryza sativa |
transcript | LOC_Os12g44310.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAGGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTG GTTTGATGGAGATGGEST: gi|29682273|gb|CB678548.1|CB678548
genomic: TCA-GGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGgtattaaccc ... gtttccacagGTTTGATGGAGATGG
EST: GTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTG GTTTGATGGAGATGGEST: gi|58589679|gb|CF987987.1|CF987987
genomic: GTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGgtattaaccc ... gtttccacagGTTTGATGGAGATGG
EST: GTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTG GTTTGATGGAGATGGEST: gi|33795168|gb|CF323457.1|CF323457
genomic: GTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGgtattaaccc ... gtttccacagGTTTGATGGAGATGG
EST: GTTTGTCCCTGTCGCTGGCTATCATTG GTTTGATGGAGATGGEST: gi|88358088|gb|CI605013.1|CI605013
genomic: GTTTGTCCCTGTCGCTGGCTATCATTGgtattaaccc ... gtttccacagGTTTGATGGAGATGG
EST: TCAGGGTACGACCCAATCCACAGTTTGTCCCTGTCGCTGGCCTATCATTG GTTTGATGGAGATGGAAT
genomic: TCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGC-TATCATTGgtattaaccc ... gtttccacagGTTTGATGGAGATGGAAT
aatatctgtgcataacgtgtttaattgatttcatattctctgtttgtttccacagGTTTGATGGAGATGG
ttctctgtttgtttcc CT-rich tract
tttaattgatttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacacaaaatacatatcctcatacctgttggcctgttgcttccaatatctgtgcataacgtgtttaattgatttcatattctctgtttgtttccacagGTTTGATGGAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - cacaaaa
- - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - tgcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgcata