1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcctaacccacaactctgaagttattgtagtgcattattatttttttctgttctagaagattgatcctgactaatggttgagagttacgatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
species | Oryza sativa |
transcript | LOC_Os01g38620.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|58594793|gb|CF993101.1|CF993101
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGGCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|27577389|gb|CB000084.1|CB000084
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|218504651|gb|FG960768.1|FG960768
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|218486574|gb|FG956238.1|FG956238
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCEST: gi|33795398|gb|CF323569.1|CF323569
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTC
EST: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|58655403|gb|CK044083.1|CK044083
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|38472674|gb|CF956806.1|CF956806
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: CAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|86908033|gb|CI298799.1|CI298799
genomic: CAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|27577966|gb|CB000661.1|CB000661
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|218495275|gb|FG966279.1|FG966279
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: GTCAGAATATGTCACCAAAGTTATCTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|218500721|gb|FG955417.1|FG955417
genomic: ATCAGAATATGTCACCAAAGTTAT-TCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: TCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|33793613|gb|CF322690.1|CF322690
genomic: TCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|38473357|gb|CF957489.1|CF957489
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|38478638|gb|CF962771.1|CF962771
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG TEST: gi|38478638|gb|CF962771.1|CF962771
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcag-
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG TEST: gi|58588638|gb|CF986946.1|CF986946
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcag-
EST: AGGCAGAATATGTCACCAAAGTTATTCATGACTGCCAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|313080792|gb|HO213589.1|HO213589
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|27577933|gb|CB000628.1|CB000628
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACCCTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|58598824|gb|CK009352.1|CK009352
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|218483500|gb|FG948234.1|FG948234
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|25801465|gb|CA757426.1|CA757426
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAGEST: gi|218502513|gb|FG958404.1|FG958404
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
EST: AGTCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAG GCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
genomic: AATCAGAATATGTCACCAAAGTTATTCATGACTGCAAAAGGGACAGTGAGgtgcctaacc ... gatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
ttttctgttctagaagattgatcctgactaatggttgagagttacgatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
gactaat putative branch site (score: 2)
atatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctaacccacaactctgaagttattgtagtgcattattatttttttctgttctagaagattgatcctgactaatggttgagagttacgatattgcagGCTCTGTATTTCCAGTTTGGCATAAAATTGCATAATGTGATGGATACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA